Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M08
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    29   0.87 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.1  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   8.1  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 734 GMRKAPTLPRRGERRTRYSGKRPGFGNRRAHEGASRGXNG 615
           G+  +P++P  G  R  Y G+ PG  NR+ + G   G  G
Sbjct: 423 GVPFSPSMPS-GSSRGGYHGRNPGGPNRQRYRGRRDGRGG 461


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 549 EHHKNRRSSQRWRNPTGL*RYQAV---XPPG 632
           ++HKNR+S+     P GL  Y+AV    PPG
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 615 AVXPPGSSLVRSPVXEPWPLTGIPGPPFSPSGKRG 719
           AV  P  +    PV  P P+ G P PP  P G  G
Sbjct: 738 AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 659 RTLAAYRNTWSAFLPFGEAWAPFSYXTLV 745
           RT+   R TW+  LP GE  A  S   L+
Sbjct: 686 RTIVVQRETWNIELPNGEVQASRSQIPLI 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,064
Number of Sequences: 5004
Number of extensions: 63483
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)