Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_M08
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.1
AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class ho... 29 4.4
AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical... 29 4.4
AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical ... 29 4.4
AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical ... 29 4.4
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 5.8
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 7.7
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 796 PRNPPXSPRTAAPLSGNXPSXXPPR 870
PR P SP T +P +G+ P+ PPR
Sbjct: 404 PRGPRRSPPTGSPPTGSPPTGRPPR 428
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/82 (32%), Positives = 35/82 (42%)
Frame = +1
Query: 625 PLEAPSCALLXPNPGRLPEYLVRLSPLRGSVGAFLIPHXGXYLXSGVRSXXSKLGCVPRN 804
P +P L + PE SP GS PH G S S S+ G PR
Sbjct: 432 PTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGR-PHRGGPGKS--ESSESREG--PRG 486
Query: 805 PPXSPRTAAPLSGNXPSXXPPR 870
P SP T +P +G+ P+ PP+
Sbjct: 487 PRRSPPTGSPPTGSPPTGAPPK 508
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 796 PRNPPXSPRTAAPLSGNXPSXXPPR 870
PR P SP T +P +G+ P+ PPR
Sbjct: 425 PRGPRRSPPTGSPPTGSPPTGRPPR 449
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/82 (32%), Positives = 35/82 (42%)
Frame = +1
Query: 625 PLEAPSCALLXPNPGRLPEYLVRLSPLRGSVGAFLIPHXGXYLXSGVRSXXSKLGCVPRN 804
P +P L + PE SP GS PH G S S S+ G PR
Sbjct: 453 PTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGR-PHRGGPGKS--ESSESREG--PRG 507
Query: 805 PPXSPRTAAPLSGNXPSXXPPR 870
P SP T +P +G+ P+ PP+
Sbjct: 508 PRRSPPTGSPPTGSPPTGAPPK 529
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 796 PRNPPXSPRTAAPLSGNXPSXXPPR 870
PR P SP T +P +G+ P+ PPR
Sbjct: 410 PRGPRRSPPTGSPPTGSPPTGRPPR 434
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/82 (32%), Positives = 35/82 (42%)
Frame = +1
Query: 625 PLEAPSCALLXPNPGRLPEYLVRLSPLRGSVGAFLIPHXGXYLXSGVRSXXSKLGCVPRN 804
P +P L + PE SP GS PH G S S S+ G PR
Sbjct: 438 PTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGR-PHRGGPGKS--ESSESREG--PRG 492
Query: 805 PPXSPRTAAPLSGNXPSXXPPR 870
P SP T +P +G+ P+ PP+
Sbjct: 493 PRRSPPTGSPPTGSPPTGAPPK 514
>AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class
homeodomain protein protein.
Length = 298
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 436 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYK 606
+ GI +E++ E SKR P +FS+ S +PL S+ ++ Q ++ ++
Sbjct: 19 EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76
Query: 607 DTRPFXPLEAPSCALLXPNPGRLP 678
T P E P PGRLP
Sbjct: 77 GTNAGVPGEFPY------GPGRLP 94
>AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical
protein Y47D7A.11 protein.
Length = 129
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 740 LVXISXPVLGXSXPSWAVFPETPPFHPEPLRPYPVTXRLXXXP 868
LV PV S P+ +P PP +P P + YPV P
Sbjct: 14 LVQCGYPVAENSYPTTPSYPTPPPSYPTP-KKYPVAPTYPSPP 55
>AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical
protein Y47D7A.2 protein.
Length = 119
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 740 LVXISXPVLGXSXPSWAVFPETPPFHPEPLRPYPVTXRLXXXP 868
LV PV S P+ +P PP +P P + YPV P
Sbjct: 14 LVQCGYPVAENSYPTTPSYPTPPPSYPTP-KKYPVAPTYPSTP 55
>AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical
protein Y47D7A.7 protein.
Length = 121
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 740 LVXISXPVLGXSXPSWAVFPETPPFHPEPLRPYPVTXRLXXXP 868
LV PV S P+ +P PP +P P + YPV P
Sbjct: 14 LVQCGYPVAENSYPTTPSYPTPPPSYPTP-KKYPVAPTYPSTP 55
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -2
Query: 718 PRFPEGEKGGPGIPVS----GQGSXTGERTRELPGGXTAWYLYSPVG 590
P P G+ G PG P + GQ G+R+ PG A PVG
Sbjct: 171 PEGPAGDAGAPGAPGAPGNDGQPGQNGQRSTGTPGAAGAPGPQGPVG 217
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -2
Query: 718 PRFPEGEKGGPGIP----VSGQGSXTGERTRELPG 626
PR P G+ G PG P G G+R+R LPG
Sbjct: 171 PRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPG 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,701,969
Number of Sequences: 27780
Number of extensions: 397322
Number of successful extensions: 1306
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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