Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M07
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.4  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/82 (29%), Positives = 24/82 (29%)
 Frame = -3

Query: 818 GVXGAXGXGWXXKKGRXXEXPPXGGGXXXXXXXXXGXXXXXWXFXGGGXXXPQXXXGRXG 639
           G  G  G G     G      P GGG         G         GGG        G  G
Sbjct: 57  GGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGG--GGGCGGGGGGCGGGG 114

Query: 638 GGCXXXGXXXXXXRPRXGGGGG 573
           GGC   G          GGGGG
Sbjct: 115 GGCGGGGGGCGGGGGGCGGGGG 136


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/82 (29%), Positives = 24/82 (29%)
 Frame = -3

Query: 818 GVXGAXGXGWXXKKGRXXEXPPXGGGXXXXXXXXXGXXXXXWXFXGGGXXXPQXXXGRXG 639
           G  G  G G     G      P GGG         G         GGG        G  G
Sbjct: 57  GGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGG--GGGCGGGGGGCGGGG 114

Query: 638 GGCXXXGXXXXXXRPRXGGGGG 573
           GGC   G          GGGGG
Sbjct: 115 GGCGGGGGGCGGGGGGCGGGGG 136


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 29/100 (29%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
 Frame = -3

Query: 869 GXRXGRXXALGMXXGXEGVX-GAXGXGWXXKKGRXXEXPPXGGGXXXXXXXXXGXXXXXW 693
           G R G     G   G  G   G  G GW    GR       GGG         G      
Sbjct: 37  GGRSGGWGRPGWGGGGPGWGRGGGGSGWGG--GRGGGWGNNGGGGNWGGNGGGGNGGGGR 94

Query: 692 XFXGGGXXXPQXXXGRXGGGCXXXGXXXXXXRPRXGGGGG 573
              GGG        G  GGG    G        R GGG G
Sbjct: 95  GGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGRG 134


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/58 (29%), Positives = 19/58 (32%)
 Frame = +1

Query: 637 PPXLPXXXXGXXXPPPXNXXLXXSXPXXXXSQXXXPPPXGGXSXXRPFFXXHPXPXAP 810
           PP +P    G   PPP    +    P         PP  GG     P F   P P  P
Sbjct: 66  PPPVPN---GFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = +1

Query: 634 PPPXLPXXXXGXXXPPPXNXXLXXS-XPXXXXSQXXXPPPXGGXSXXRPFFXXHPXPXAP 810
           PPP LP    G   PPP       +  P         PP  GG     P     P P  P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774

Query: 811 XTP 819
             P
Sbjct: 775 PPP 777



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/74 (29%), Positives = 23/74 (31%)
 Frame = +1

Query: 619 PXXXQPPPXLPXXXXGXXXPPPXNXXLXXSXPXXXXSQXXXPPPXGGXSXXRPFFXXHPX 798
           P    PP  LP    G   PPP         P         PPP GG     P     P 
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPP---------PPGGCPPPPPPPPPGGFKGGPPP-PPPPG 791

Query: 799 PXAPXTPSXPXXIP 840
             AP  P  P  +P
Sbjct: 792 MFAPMAPVIPDYLP 805


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = +1

Query: 634 PPPXLPXXXXGXXXPPPXNXXLXXS-XPXXXXSQXXXPPPXGGXSXXRPFFXXHPXPXAP 810
           PPP LP    G   PPP       +  P         PP  GG     P     P P  P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774

Query: 811 XTP 819
             P
Sbjct: 775 PPP 777



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/74 (29%), Positives = 23/74 (31%)
 Frame = +1

Query: 619 PXXXQPPPXLPXXXXGXXXPPPXNXXLXXSXPXXXXSQXXXPPPXGGXSXXRPFFXXHPX 798
           P    PP  LP    G   PPP         P         PPP GG     P     P 
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPP---------PPGGCPPPPPPPPPGGFKGGPPP-PPPPG 791

Query: 799 PXAPXTPSXPXXIP 840
             AP  P  P  +P
Sbjct: 792 MFAPMAPVIPDYLP 805


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = +1

Query: 634 PPPXLPXXXXGXXXPPPXNXXLXXS-XPXXXXSQXXXPPPXGGXSXXRPFFXXHPXPXAP 810
           PPP LP    G   PPP       +  P         PP  GG     P     P P  P
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357

Query: 811 XTP 819
             P
Sbjct: 358 PPP 360



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/74 (29%), Positives = 23/74 (31%)
 Frame = +1

Query: 619 PXXXQPPPXLPXXXXGXXXPPPXNXXLXXSXPXXXXSQXXXPPPXGGXSXXRPFFXXHPX 798
           P    PP  LP    G   PPP         P         PPP GG     P     P 
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPP---------PPGGCPPPPPPPPPGGFKGGPPP-PPPPG 374

Query: 799 PXAPXTPSXPXXIP 840
             AP  P  P  +P
Sbjct: 375 MFAPMAPVIPDYLP 388


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = +1

Query: 619 PXXXQPPPXLPXXXXGXXXPPPXNXXLXXSXPXXXXSQXXXPPPXGG 759
           P    PPP LP    G   PPP    +    P         PPP GG
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPP-------PPPPPPGG 598


>AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.17 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 815 PPXXPXTSXAPXAXPSXFXXXPPPPP 892
           PP       AP A P  +   PPPPP
Sbjct: 325 PPPYSYYPVAPAAAPQVYHYAPPPPP 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,106,600
Number of Sequences: 27780
Number of extensions: 146906
Number of successful extensions: 686
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)