Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_M06
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 236 3e-63
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 236 3e-63
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 49 1e-06
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.096
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.29
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.29
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.51
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 1.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 1.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.3
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 6.3
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 6.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 8.4
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 236 bits (578), Expect = 3e-63
Identities = 108/143 (75%), Positives = 125/143 (87%)
Frame = +2
Query: 83 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 262
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 263 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 442
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 443 KVVKVANVSLLALYKEKKERPRS 511
KVVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 236 bits (578), Expect = 3e-63
Identities = 108/143 (75%), Positives = 125/143 (87%)
Frame = +2
Query: 83 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 262
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 263 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 442
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 443 KVVKVANVSLLALYKEKKERPRS 511
KVVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 48.8 bits (111), Expect = 1e-06
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +2
Query: 209 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 388
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 389 AGFGRKGHAVGDIPGVRFKVVK 454
G GR D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.096
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +1
Query: 604 VQPHXPPXXPPPPXPPPPXXXXXPRPXAPXFPFXXAGXFXXPTXQXPSXXXXXPPPPL 777
+ P P PP P PP P P P P P PPPPL
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +1
Query: 610 PHXPPXXPPPPXPPPPXXXXXPRPXAPXFPFXXAGXFXXPTXQXPSXXXXXPPPP 774
P PP PPPP P RP + P AG T + P P P
Sbjct: 195 PPMPPKVPPPPLSQAPVANTSSRPSSFAPP---AGHAPNVTSESPKFPNRGPSIP 246
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 619 PPXXPPPPXPPPPXXXXXPRPXAPXFP 699
PP PPPP PPPP +P P P
Sbjct: 5 PPGNPPPP-PPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 610 PHXPPXXPPPPXPPPPXXXXXPRP 681
P PP PPPP PP P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 631 PPPPXPPPPXXXXXPRPXAPXFPFXXAG 714
PPPP PPP P P P P AG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +1
Query: 619 PPXXPPPPXPPPPXXXXXPRPXAPXFPFXXAGXFXXPTXQXPSXXXXXPPPP 774
PP PPPP P P P P P P P PPPP
Sbjct: 732 PP--PPPPAVIVPTPAPAPIPVPPPAPIMGG---PPPPPPPPGVAGAGPPPP 778
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.51
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Frame = +1
Query: 610 PHXPPXXPPP----PXPPPPXXXXXPRPXAPXFPFXXAGXFXXPTXQXPSXXXXXPPPP 774
P P PP P PPPP P P AP P AG P P+ P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP---AGPPSAPPPPLPASSAPSVPNP 1746
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect(2) = 1.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 631 PPPPXPPPP 657
PPPP PPPP
Sbjct: 189 PPPPPPPPP 197
Score = 20.6 bits (41), Expect(2) = 1.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1
Query: 613 HXPPXXPPPP 642
+ PP PPPP
Sbjct: 187 YNPPPPPPPP 196
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 1.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 622 PXXPPPPXPPPP 657
P PPPP PPPP
Sbjct: 942 PAFPPPPPPPPP 953
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 583 LVHNKYCVQPHXPPXXPPPPXPPP 654
+V N V P PPPP PPP
Sbjct: 930 IVANDTSVAGVMPAFPPPPPPPPP 953
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.6 bits (51), Expect(2) = 3.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 631 PPPPXPPPPXXXXXPR 678
PPPP PPP P+
Sbjct: 370 PPPPPPPPELLNHSPK 385
Score = 20.6 bits (41), Expect(2) = 3.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1
Query: 613 HXPPXXPPPP 642
+ PP PPPP
Sbjct: 368 YSPPPPPPPP 377
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.8
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +1
Query: 610 PHXPPXXPP--PPXPPPPXXXXXPR-----PXAPXFPFXXAGXFXXPTXQXPSXXXXXPP 768
P PP PP PP PP P P AP P AG P P PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP--PLPPAAPAPPP 478
Query: 769 PP 774
P
Sbjct: 479 AP 480
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 631 PPPPXPPPP 657
PPPP PPPP
Sbjct: 306 PPPPPPPPP 314
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/58 (27%), Positives = 17/58 (29%)
Frame = +1
Query: 592 NKYCVQPHXPPXXPPPPXPPPPXXXXXPRPXAPXFPFXXAGXFXXPTXQXPSXXXXXP 765
N+ P PPPP P P P P P F PT S P
Sbjct: 343 NQVMPTPQVQGSRPPPPPPMPAPIYNVPN--VPTVPTVSPNPFLQPTFSGTSQASAHP 398
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 390 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 274
++S S F S+WFRQ + AVT+F MS HL A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +1
Query: 610 PHXPPXXPPPPXPPPPXXXXXPRP--XAPXFPFXXAGXFXXPTXQXPSXXXXXPPPP 774
P P PP P P P+P AP P +G P P+ PPP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG---IPPVPKPAAGVPPVPPP 1194
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 450 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 340
+++K P + P P P+ AT+TSS +++ PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,535
Number of Sequences: 5004
Number of extensions: 64850
Number of successful extensions: 302
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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