Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M05
         (1111 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.38 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.38 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    29   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   2.7  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   6.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 94   PPPPXTXXXPXXXXXXXPAGPPXPPP 171
            PPPP     P       PAGPP  PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 86   TXPPPXPXXXPPPT-XXXXXXPPAPPXPP 169
            T PPP     PPP+       PP+ P PP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 95  PPXPXXXPPPTXXXXXXPPAPPXPPP 172
           PP P   PPP       PP PP PPP
Sbjct: 761 PPPP---PPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.67
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 92  PPPXPXXXPPPTXXXXXXPPAPPXP 166
           P P P   PPP       PP PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 91  PPPPPXTXXXPXXXXXXXPAGPPXP 165
           PPPPP     P       P  PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP 756



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = +2

Query: 92  PPPXPXXX--PPPTXXXXXXPPAPPXPPP 172
           PPP P     PPP          PP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 92  PPPXPXXXPPPTXXXXXXPPAPPXPPPF 175
           PP  P   PPP        P PP PP +
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGY 32



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 85  NXPPPPPXTXXXPXXXXXXXPAGPPXPPP 171
           N PPPPP     P       P+ PP PPP
Sbjct: 8   NPPPPPPPPGFEP-------PSQPPPPPP 29


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 56  KLLNIFGEXTTXPPPXPXXXPPPTXXXXXXPPAPPXPPP 172
           K++++  + TT P       P P       PP PP P P
Sbjct: 327 KIMSLLRQTTTTPFAGNQVMPTPQVQGSRPPPPPPMPAP 365


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 92  PPPXPXXXPPPTXXXXXXPPAPPXPPP 172
           PP  P   PP        P  PP PPP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 168 GGXGGAGGXXXXXXVGGGXXXGXGG 94
           GG GG GG       GGG   G GG
Sbjct: 454 GGFGGRGGFGGRGGFGGGRGRGRGG 478


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 174 KGGGXGGAGGXXXXXXVGGGXXXGXGGG 91
           +GG  GG GG       GGG   G GGG
Sbjct: 147 RGGSRGGFGGNSRGGF-GGGSRGGFGGG 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,054
Number of Sequences: 5004
Number of extensions: 23511
Number of successful extensions: 330
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 587693690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)