Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M05
         (1111 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 50  EFKLLNI-FGEXTTXPPPXPXXXPP 121
           E+ L+NI  G+  T P P P   PP
Sbjct: 324 EYCLVNIVLGDSDTPPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 149 PAPPXPPP 172
           PAPP PPP
Sbjct: 341 PAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +2

Query: 95  PPXPXXXPPPTXXXXXXPPAPPXPPP 172
           P  P    PP       P  PP  PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,075
Number of Sequences: 438
Number of extensions: 5820
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37355310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)