Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M04
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   4.8  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   4.8  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   6.3  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   6.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   8.4  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 76  AVYCFCKFLEHNQILRIPYSESY 8
           + YC CK + +   LRIP +++Y
Sbjct: 273 STYCACKVIVYQFFLRIPETDTY 295


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 76  AVYCFCKFLEHNQILRIPYSESY 8
           + YC CK + +   LRIP +++Y
Sbjct: 273 STYCACKVIVYQFFLRIPETDTY 295


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 67   CFCKFLEHNQILRIPYSESYE 5
            C CK + +    R+PY+++YE
Sbjct: 1091 CNCKAIVYQFFFRVPYTDTYE 1111


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 98  ILKFFFVFXVACLWCHVVQPLQQKYLSRAIKTVGKG 205
           +L  + VF + C  C   + L Q   +RAI  +G G
Sbjct: 157 LLAAYCVFGIGCFLCGTSRSLWQLVAARAIAGIGGG 192


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 728 KAXXFPNFPK*RDFF 684
           KA  FPNFPK ++FF
Sbjct: 205 KAKKFPNFPKLKNFF 219


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 46  VLKICK-NSKPRSYLKHEYFKIFLCXYXGMSLVSCS 150
           VLK+ +  +K R   KH Y  + +C +   S++SC+
Sbjct: 48  VLKVSEIEAKKRRRKKHRYIYLAVCLFFLASVLSCA 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,417
Number of Sequences: 5004
Number of extensions: 35847
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)