Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M04
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 143 HVVQPLQQKYLSRAIKTVGKGVGK 214
           HV +  +  YL +A   +G G+GK
Sbjct: 775 HVKEDREGFYLCQASNGIGSGIGK 798


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 143 HVVQPLQQKYLSRAIKTVGKGVGK 214
           HV +  +  YL +A   +G G+GK
Sbjct: 771 HVKEDREGFYLCQASNGIGSGIGK 794


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
          D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 88 LNNCAVYCFCKFLEHNQILRIPYSESY 8
          +N  AVY      E NQ+ R  YS SY
Sbjct: 1  MNESAVYLLGSEEEGNQLNRSFYSASY 27


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 470 NWTPVVLPXXIGTSGX*VVXPPG*TKXP 387
           +WTP  +   IG  G   +  PG T  P
Sbjct: 286 SWTPYGVMSMIGAFGNKALLTPGVTMIP 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,374
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)