Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M03
         (1137 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    29   4.6  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    29   4.6  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    29   4.6  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    29   4.6  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    29   4.6  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    29   4.6  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    23   9.3  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    23   9.3  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    23   9.3  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    23   9.4  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    23   9.4  

>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1759

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 159 PVWPAXKGPGGAAKNQEEXPXLXGXEGXPFKPRPRVTALILPKGRPNLAG 308
           P +P  KG GG        P   G +G P +P P       P G+P L G
Sbjct: 690 PGFPGAKGDGGLPG----LPGTPGLQGMPGEPAPENQVNPAPPGQPGLPG 735


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1758

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 159 PVWPAXKGPGGAAKNQEEXPXLXGXEGXPFKPRPRVTALILPKGRPNLAG 308
           P +P  KG GG        P   G +G P +P P       P G+P L G
Sbjct: 689 PGFPGAKGDGGLPG----LPGTPGLQGMPGEPAPENQVNPAPPGQPGLPG 734


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
           isoform a protein.
          Length = 1758

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 159 PVWPAXKGPGGAAKNQEEXPXLXGXEGXPFKPRPRVTALILPKGRPNLAG 308
           P +P  KG GG        P   G +G P +P P       P G+P L G
Sbjct: 689 PGFPGAKGDGGLPG----LPGTPGLQGMPGEPAPENQVNPAPPGQPGLPG 734


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
           isoform b protein.
          Length = 1759

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 159 PVWPAXKGPGGAAKNQEEXPXLXGXEGXPFKPRPRVTALILPKGRPNLAG 308
           P +P  KG GG        P   G +G P +P P       P G+P L G
Sbjct: 690 PGFPGAKGDGGLPG----LPGTPGLQGMPGEPAPENQVNPAPPGQPGLPG 735


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
           collagen protein.
          Length = 1795

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 159 PVWPAXKGPGGAAKNQEEXPXLXGXEGXPFKPRPRVTALILPKGRPNLAG 308
           P +P  KG GG        P   G +G P +P P       P G+P L G
Sbjct: 726 PGFPGAKGDGGLPG----LPGTPGLQGMPGEPAPENQVNPAPPGQPGLPG 771


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +3

Query: 105 GTPGXXXQQEXT*LELNXPVWPAXKGPGGAAKNQ--EEXPXLXGXEGXPFKPRPR 263
           G PG    QE        P+ P   GP G A  Q     P   G +G P +P P+
Sbjct: 193 GAPGAPEHQESQECPRGEPLIPGEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPK 247


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = -2

Query: 707 GNNGQLXW---QRSAGGGGW 657
           G  GQ  W   Q+  GGGGW
Sbjct: 265 GGGGQGGWGGPQQQQGGGGW 284



 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 683 QRSAGGGGWNGR 648
           Q+  GGGGW G+
Sbjct: 310 QQGGGGGGWGGQ 321


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = -2

Query: 707 GNNGQLXW---QRSAGGGGW 657
           G  GQ  W   Q+  GGGGW
Sbjct: 264 GGGGQGGWGGPQQQQGGGGW 283



 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 683 QRSAGGGGWNGR 648
           Q+  GGGGW G+
Sbjct: 309 QQGGGGGGWGGQ 320


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = -2

Query: 707 GNNGQLXW---QRSAGGGGW 657
           G  GQ  W   Q+  GGGGW
Sbjct: 264 GGGGQGGWGGPQQQQGGGGW 283



 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 683 QRSAGGGGWNGR 648
           Q+  GGGGW G+
Sbjct: 309 QQGGGGGGWGGQ 320


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 9.4
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = -2

Query: 707 GNNGQLXW---QRSAGGGGW 657
           G  GQ  W   Q+  GGGGW
Sbjct: 227 GGGGQGGWGGPQQQQGGGGW 246



 Score = 23.4 bits (48), Expect(2) = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 683 QRSAGGGGWNGR 648
           Q+  GGGGW G+
Sbjct: 272 QQGGGGGGWGGQ 283


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 23.4 bits (48), Expect(2) = 9.4
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = -2

Query: 707 GNNGQLXW---QRSAGGGGW 657
           G  GQ  W   Q+  GGGGW
Sbjct: 226 GGGGQGGWGGPQQQQGGGGW 245



 Score = 23.4 bits (48), Expect(2) = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 683 QRSAGGGGWNGR 648
           Q+  GGGGW G+
Sbjct: 271 QQGGGGGGWGGQ 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,245,146
Number of Sequences: 27780
Number of extensions: 324740
Number of successful extensions: 636
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3078165110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)