Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M02
         (1047 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   5.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 873 PPPPXPRAXGXGGXXGPXPLXFXPPPXP 956
           PPPP PR+   G    P      PPP P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -3

Query: 949 GGGXXXRGXGPXXPPXPXARGXGGGGXXGGGG 854
           GGG    G G   PP P   G GG G  GG G
Sbjct: 187 GGGFGGFGGGSGGPP-PGPGGFGGFGGFGGEG 217


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
 Frame = +3

Query: 855 PPPPXXP----PPPXPRAXGXGGXXGPXPLXFXPPPXP 956
           P PP  P    PPP P   G  G   P P    PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP----PPPPP 783


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 855 PPPPXXPPPPXPRAXGXGGXXGPXPLXFXPPPXP 956
           PP P  PPP    A        P P    PP  P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 873  PPPPXPRAXGXGGXXGPXPLXFXPPPXP 956
            PPPP P A    G     P    PP  P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP 1909


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 6.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 855 PPPPXXPPP 881
           PPPP  PPP
Sbjct: 189 PPPPPPPPP 197



 Score = 21.4 bits (43), Expect(2) = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 858 PPPXXPPPPXP 890
           P P  PPPP P
Sbjct: 234 PLPAPPPPPPP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,140
Number of Sequences: 5004
Number of extensions: 27124
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)