Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_L24
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.15 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.74 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.97 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect(2) = 0.15
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 809 PPAPAPPPP 835
           PP PAPPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 810 PRPPPPPPXXXRP 848
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 811 PGPRPPPPXXXXPPXA 858
           P P PPPP    P  A
Sbjct: 341 PAPPPPPPSSSGPDSA 356



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 810 PRPPPPPPXXXRPXP 854
           P+P PPPP      P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 21.0 bits (42), Expect(2) = 0.15
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 872 PTXAXPPPXPATHXP 916
           P  A PPP P++  P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +1

Query: 784 PPXPXQXXXPGPRPPPPXXXXPPXAPSSXPHXRAXPPXS 900
           P  P +   P P   PP    P   PS  P      P S
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPAS 69



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 811 PGPRPPPPXXXXPPXAPSSXPHXRAXPPXSRHPXPP 918
           PGP+P P      P    S P+    PP    P  P
Sbjct: 21  PGPQPSPHQSPQAPQR-GSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
 Frame = +2

Query: 761 PAXGGP-PXP-PXXXXXXPPAPAPPPPXXXXXPXPXPLXPTXAXP 889
           P+ G P P P P      P   +PP P     P   P  P    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 859 GRGXGRXXXGGGGGGRGXXXG 797
           GRG GR    GG  GRG   G
Sbjct: 79  GRGKGRGHGKGGSRGRGGNRG 99


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 810  PRPPPPPP 833
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 810  PRPPPPPP 833
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +1

Query: 733  PAXAGPXXPSCLXX-PXXPPXPXQXXXPGPRPPPPXXXXPPXAPSSXP 873
            P   G   PS +   P  P  P     P P  P P     P  P+  P
Sbjct: 1139 PGPNGIKMPSFMEGMPHLPFTPFNFWNPPPFMPSPFMAGAPNVPTILP 1186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,420
Number of Sequences: 438
Number of extensions: 6649
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)