Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_L21
         (966 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.8  
07_01_0479 + 3606663-3607448                                           30   2.4  
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    30   3.2  
09_02_0495 + 9880714-9881196                                           29   4.2  
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886...    29   4.2  
07_01_0080 + 587674-588510                                             29   5.5  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   5.5  
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    28   9.7  
06_03_1310 + 29238644-29240260                                         28   9.7  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           28   9.7  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -1

Query: 336 PXXPKXXFFXPPFXXGGXPPPXXFFFXGXXXXPPPRGXPXPXPP 205
           P  P      PP    G PPP      G    PPP+G   P PP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPA--KGPPPPPPPKGPSPPPPP 368


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 306 PPFXXGGXPPPXXFFFXGXXXXPPPRGXPXPXP 208
           PP   GG PPP   F  G    PPP G P   P
Sbjct: 194 PPAFPGGPPPPPGPFMRG----PPPMGPPQVRP 222


>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 426 GGGGXFXXPXKXPPPPPXGRXXFFWG 503
           GGGG    P   PPPPP      F+G
Sbjct: 93  GGGGWVQLPPPPPPPPPPQGTLAFYG 118


>09_02_0495 + 9880714-9881196
          Length = 160

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/55 (32%), Positives = 18/55 (32%)
 Frame = -2

Query: 437 PPPPGXXXKKXXXXGGXXXXFXXLXGGXKXPXXPPFXPKXXFFXPLXXGGXPXXP 273
           PPPP          GG       L GG   P  P   P    F P   GG P  P
Sbjct: 51  PPPPPAGSSSSSSSGGGDGGAGGLFGGTYPPPPPGVMP--GAFAPPFGGGFPYGP 103


>03_05_1153 +
           30787574-30787608,30787982-30788089,30788651-30788689,
           30789181-30789184,30789496-30789580,30789609-30790321
          Length = 327

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +3

Query: 357 PPXKXXKXXXXPPXXXXFFXPXPGGGGXFXXPXKXPPPPP 476
           PP K  +    PP       P P        P K PPPPP
Sbjct: 194 PPPKEEEKPEPPPAVIIVEPPAPAPEPEPEPPKKEPPPPP 233


>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 417 PXPGGGGXFXXPXKXPPPPP 476
           P  GG G F  P   PPPPP
Sbjct: 80  PRLGGDGMFRRPPPPPPPPP 99


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +3

Query: 390 PPXXXXFFXPXP----GGGGXFXXPXKXPPPPP 476
           PP    ++ P P    GGGG +  P   PPPPP
Sbjct: 74  PPPSPDYYDPPPSPYYGGGGGYGKP---PPPPP 103


>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 417 PXPGGGGXFXXPXKXPPPPP 476
           P  GGGG    P   PPPPP
Sbjct: 31  PSCGGGGGGAGPTPPPPPPP 50


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
 Frame = -1

Query: 342 GXPXXPKXXFFXPPFXXGGXPP-PXXFFFXGXXXXPPPRGXPXPXPP 205
           G P  P    + PP   GG  P P           PPP G   P PP
Sbjct: 475 GTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSSPPPPPSGDKLPFPP 521


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 426 GGGGXFXXPXKXPPPPPXGR 485
           GGGG F      PPPPP  R
Sbjct: 24  GGGGGFSPTAAKPPPPPSPR 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,060
Number of Sequences: 37544
Number of extensions: 217618
Number of successful extensions: 1334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)