Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_L20
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053...    30   2.1  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.6  
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283...    29   4.8  

>06_03_0507 +
           21603472-21603750,21604371-21604463,21605046-21605372,
           21605588-21605863,21606095-21607114
          Length = 664

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 66  SDHEDCLDFS--GAYCPRSQVAP 128
           SD E CL  S  G YCPRSQ AP
Sbjct: 273 SDQEKCLRRSECGPYCPRSQCAP 295


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 268  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 366
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>06_01_0394 -
           2835438-2835896,2836664-2836913,2837197-2837669,
           2838941-2840608
          Length = 949

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -1

Query: 833 YPGSHQTGKGGGEISNNKHLGQHXPVK*ANSVFVVGVS 720
           YPG    G GGG   N+K  G H P   A    V   S
Sbjct: 308 YPGDDDDGGGGGGGDNDKTRGPHYPALLAYDTIVAVAS 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,554,466
Number of Sequences: 37544
Number of extensions: 399862
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)