Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_L19
(924 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.033
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.13
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.8
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 4.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.9
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 8.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.033
Identities = 31/127 (24%), Positives = 36/127 (28%)
Frame = +1
Query: 517 VLKXPXXXPPPPXXXXXXXXXPXGPXXSPFTGGXTGAPQPXQNXXGGLGXXXXXXXXXXT 696
V K PP P P P +P T P P G +
Sbjct: 1014 VPKLSSKAPPVPLPSADAPPIPV-PSTAPPVPIPTSTP-PVPKSSSGAPSAPPPVPAPSS 1071
Query: 697 XXPXLXAPXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXX 876
P + AP A P G P P P+ P P P PP+P
Sbjct: 1072 EIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP--PVPKPSVAVPPVPAPSGAPPVPKPSVA 1129
Query: 877 KPPPPPP 897
PP P P
Sbjct: 1130 APPVPVP 1136
Score = 33.5 bits (73), Expect = 0.043
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +1
Query: 703 PXLXAPXRAXPPXXXX-GTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXK 879
P + P A PP G P P P+ P P P PP+P+ P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAP--PVPAPSSGIPPVPKPAAGVPPVPPPSEA 1197
Query: 880 PPPPPP 897
PP P P
Sbjct: 1198 PPVPKP 1203
Score = 33.1 bits (72), Expect = 0.057
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Frame = +1
Query: 703 PXLXAPXRAXP-PXXXXGTPXFPXPNTXLPHXPXX-------PPXXXXPPLPRGXXXRTX 858
P + AP A P P P P P++ +P P PP PP+P+
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 859 XPRXXXKPPPPPP 897
P PP P P
Sbjct: 1210 VPPPSTAPPVPTP 1222
Score = 30.7 bits (66), Expect = 0.30
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +1
Query: 703 PXLXAPXRAXPPXXXX-GTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXK 879
P + P A PP G P P P+ P P PP+P+ P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS---GAPPVPKPSVAAPPVPAPSGA 1158
Query: 880 PPPPPP 897
PP P P
Sbjct: 1159 PPVPKP 1164
Score = 29.9 bits (64), Expect = 0.53
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Frame = +1
Query: 703 PXLXAPXRAXPPXXXX--GTPXFPXPNTXLP------HXPXXPPXXXXPPLPRGXXXRTX 858
P + AP PP G P P P+ P P PP PP+P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Query: 859 XPRXXXKPPPPP 894
P K PP P
Sbjct: 1229 VPVPTAKAPPVP 1240
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/75 (28%), Positives = 25/75 (33%)
Frame = +2
Query: 536 PPXPPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPXXX 715
PP P P P P P+ PP + G+ P PP P P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVP-PVPPPSEAPPVPKPSV--GVPPVPPPSTAPPVPTPSAG 1225
Query: 716 XPXGPXPLXXXXAPP 760
P P P+ APP
Sbjct: 1226 LP--PVPVPTAKAPP 1238
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Frame = +1
Query: 694 TXXPXLXAPXRAXPPXXXXGTPXFPXPNTXL--PHXPXXPPXXXX-PPLPRGXXXRTXXP 864
T P + P + PP P P+ + P P PP PPLP G P
Sbjct: 412 TSTPPVPTPP-SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Query: 865 RXXXKPPPPP 894
PPP P
Sbjct: 471 PAAPAPPPAP 480
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 772 PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P+ PP PP T P PPPPPP
Sbjct: 156 PTVSAPNSMVSPPPSFQPP--SAAAPATSLPSDYNPPPPPPP 195
Score = 24.6 bits (51), Expect(2) = 2.1
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = +1
Query: 703 PXLXAPXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPP 828
P + AP P P P T LP PP PP
Sbjct: 156 PTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 21.4 bits (43), Expect(2) = 2.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Frame = +1
Query: 823 PPLPRGXXXRTXXPRXXXKPPPPP 894
P +P + P PPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Frame = +1
Query: 718 PXRAXPPXXXXGTPXFPX----PNTXLPHXPXXPPXXXXPPLP 834
P A PP TP P P P P PP PPLP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 192 VMLKASTRAKTKDRIFAKFIVSLCKFKARTLRHKRRCTDHLMCTI 58
V +K + KDR+ F KA++ +HKR DH + TI
Sbjct: 464 VRVKVVQEKRNKDRLIVTFRFWYYLMKAKSFQHKR---DHRLLTI 505
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Frame = +1
Query: 784 LPHXPXXPPXXXXP-PLPRGXXXRTXXPRXXXKPPPPPP 897
L P PP P P P P PPPPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +1
Query: 733 PPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
PP TP P P +P P P PP P P PPPPPP
Sbjct: 736 PPAVIVPTPA-PAP---IPVPPPAPIMGGPPPPPPPPGVAGAGP---PPPPPPPP 783
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/48 (31%), Positives = 32/48 (66%)
Frame = +2
Query: 98 LNVRALNLHKLTMNFAKILSFVFALVLALSMTSAAPEPRWKIFKKIEK 241
++V+A ++ K+T +I+ F+FALV+++++ A W+ KK+E+
Sbjct: 561 VSVKAPSMQKVTN---RIVIFIFALVVSMAIYCTAAYFVWQ--KKVER 603
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,800
Number of Sequences: 5004
Number of extensions: 48111
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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