Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_L19
(924 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 38 0.010
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 38 0.010
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 38 0.010
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 36 0.041
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.054
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.054
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.054
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.054
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.054
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 35 0.071
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 35 0.071
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 35 0.071
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 35 0.071
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 34 0.12
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 34 0.12
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 33 0.29
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 32 0.50
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 32 0.50
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 32 0.50
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.50
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 32 0.67
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 32 0.67
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 32 0.67
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 32 0.67
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.88
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 31 0.88
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 31 0.88
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 1.2
Z78537-4|CAB01721.1| 569|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68014-14|CAA92030.1| 569|Caenorhabditis elegans Hypothetical p... 30 2.0
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 30 2.0
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.7
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.7
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 3.6
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 3.6
Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical p... 29 4.7
Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical p... 29 4.7
Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.7
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 6.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.2
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 6.2
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 6.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 6.2
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 28 8.2
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 28 8.2
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 8.2
U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical pr... 28 8.2
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 28 8.2
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 28 8.2
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 40.7 bits (91), Expect = 0.001
Identities = 37/126 (29%), Positives = 37/126 (29%), Gaps = 3/126 (2%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GG GGG G P GG GG G G G G G GG G
Sbjct: 40 GGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCG------GGGGGCG 93
Query: 716 AXRXGXXVXGEXXGGVGXPSPPXXF---CXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGG 546
G G GG P PP C G G G G G GG
Sbjct: 94 GGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGG 153
Query: 545 GGXXXG 528
GG G
Sbjct: 154 GGCGGG 159
Score = 33.9 bits (74), Expect = 0.17
Identities = 36/128 (28%), Positives = 36/128 (28%)
Frame = -3
Query: 922 GXGXXXXXXGGVGXVXXXXGXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXX 743
G G GG G G P GG G G G GC GG GC
Sbjct: 31 GCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGG--GCGGG 88
Query: 742 XQGAWPXXXPXGRGVXFXGXXXGGLGXQAXPXXFVXVGGPXXPPP*RXXPXXPXGGXXXX 563
G G G GG G P P PP GG
Sbjct: 89 GGGCGGGGGGCGGG--------GGCGGGCAP--------PPPPPACGGGCGGGGGGCGGG 132
Query: 562 XGGGGGXG 539
GGGGG G
Sbjct: 133 CGGGGGGG 140
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/77 (29%), Positives = 23/77 (29%)
Frame = -1
Query: 894 GGWGXFXXXPGXXGPXXXPPXXRGGXXXWXGXXXVXEXGVXXGEXGGAXXXXRGXGPXGX 715
GG G G P PP GG G G G GG G G G
Sbjct: 97 GGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGC 156
Query: 714 XKXGXXCXGGXXXGGWG 664
G C GG G G
Sbjct: 157 GGGGGGCGGGGGGCGGG 173
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -3
Query: 826 GGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXXPXGRGVXFXGXXXGG 671
GG G G G GC GG GC G G G G GG
Sbjct: 125 GGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGG 176
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 37.9 bits (84), Expect = 0.010
Identities = 32/108 (29%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Frame = +1
Query: 586 GPXXSPFTGGXTGAPQPXQNXXGGLGXXXXXXXXXXTXXPXLXAPXRAXPPXXXXGTPXF 765
G S F G G Q Q G G P P + PP G+P
Sbjct: 202 GVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPP----PPKGSPPLAGSGSPPP 257
Query: 766 PX----PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P PP PP P G PR PPPPPP
Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGSPPPPPPP 303
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/72 (27%), Positives = 20/72 (27%)
Frame = +2
Query: 545 PPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPXXXXPX 724
PPP P P P GG PP P PP PP P
Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP----PPPPPRGSPPTGSLPPPQAGG 319
Query: 725 GPXPLXXXXAPP 760
P P PP
Sbjct: 320 SPPPAGTGSPPP 331
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/106 (23%), Positives = 29/106 (27%)
Frame = +1
Query: 580 PXGPXXSPFTGGXTGAPQPXQNXXGGLGXXXXXXXXXXTXXPXLXAPXRAXPPXXXXGTP 759
P P SP G +G+P P T P + PP P
Sbjct: 240 PPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Query: 760 XFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P PP P P G PR + P P
Sbjct: 299 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 344
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/117 (23%), Positives = 28/117 (23%)
Frame = +3
Query: 546 PPPPPXXXXXPPXGXXXXXXXXXXXXXPPTXTKXXGXAWXPNPPXXLPXNXTPLPXGXXX 725
PPPPP PP PP P PP P P P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP-----RTGSPPPP---PTGSPPPPPAGGS 288
Query: 726 GXAPXLXXXHPXFPPXXHPXPXXPXXPXXSXXPPAXXGXXXPDXFXPXXQXTXPTPP 896
P P PP P P PP P Q +PP
Sbjct: 289 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 37.9 bits (84), Expect = 0.010
Identities = 32/108 (29%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Frame = +1
Query: 586 GPXXSPFTGGXTGAPQPXQNXXGGLGXXXXXXXXXXTXXPXLXAPXRAXPPXXXXGTPXF 765
G S F G G Q Q G G P P + PP G+P
Sbjct: 223 GVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPP----PPKGSPPLAGSGSPPP 278
Query: 766 PX----PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P PP PP P G PR PPPPPP
Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGSPPPPPPP 324
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/72 (27%), Positives = 20/72 (27%)
Frame = +2
Query: 545 PPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPXXXXPX 724
PPP P P P GG PP P PP PP P
Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP----PPPPPRGSPPTGSLPPPQAGG 340
Query: 725 GPXPLXXXXAPP 760
P P PP
Sbjct: 341 SPPPAGTGSPPP 352
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/106 (23%), Positives = 29/106 (27%)
Frame = +1
Query: 580 PXGPXXSPFTGGXTGAPQPXQNXXGGLGXXXXXXXXXXTXXPXLXAPXRAXPPXXXXGTP 759
P P SP G +G+P P T P + PP P
Sbjct: 261 PPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Query: 760 XFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P PP P P G PR + P P
Sbjct: 320 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 365
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/117 (23%), Positives = 28/117 (23%)
Frame = +3
Query: 546 PPPPPXXXXXPPXGXXXXXXXXXXXXXPPTXTKXXGXAWXPNPPXXLPXNXTPLPXGXXX 725
PPPPP PP PP P PP P P P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP-----RTGSPPPP---PTGSPPPPPAGGS 309
Query: 726 GXAPXLXXXHPXFPPXXHPXPXXPXXPXXSXXPPAXXGXXXPDXFXPXXQXTXPTPP 896
P P PP P P PP P Q +PP
Sbjct: 310 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 37.9 bits (84), Expect = 0.010
Identities = 32/108 (29%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Frame = +1
Query: 586 GPXXSPFTGGXTGAPQPXQNXXGGLGXXXXXXXXXXTXXPXLXAPXRAXPPXXXXGTPXF 765
G S F G G Q Q G G P P + PP G+P
Sbjct: 208 GVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPP----PPKGSPPLAGSGSPPP 263
Query: 766 PX----PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P PP PP P G PR PPPPPP
Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP--PPPRAGSPPPPPPP 309
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/72 (27%), Positives = 20/72 (27%)
Frame = +2
Query: 545 PPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPXXXXPX 724
PPP P P P GG PP P PP PP P
Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP----PPPPPRGSPPTGSLPPPQAGG 325
Query: 725 GPXPLXXXXAPP 760
P P PP
Sbjct: 326 SPPPAGTGSPPP 337
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/106 (23%), Positives = 29/106 (27%)
Frame = +1
Query: 580 PXGPXXSPFTGGXTGAPQPXQNXXGGLGXXXXXXXXXXTXXPXLXAPXRAXPPXXXXGTP 759
P P SP G +G+P P T P + PP P
Sbjct: 246 PPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Query: 760 XFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P PP P P G PR + P P
Sbjct: 305 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 350
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/117 (23%), Positives = 28/117 (23%)
Frame = +3
Query: 546 PPPPPXXXXXPPXGXXXXXXXXXXXXXPPTXTKXXGXAWXPNPPXXLPXNXTPLPXGXXX 725
PPPPP PP PP P PP P P P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP-----RTGSPPPP---PTGSPPPPPAGGS 294
Query: 726 GXAPXLXXXHPXFPPXXHPXPXXPXXPXXSXXPPAXXGXXXPDXFXPXXQXTXPTPP 896
P P PP P P PP P Q +PP
Sbjct: 295 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 35.9 bits (79), Expect = 0.041
Identities = 24/78 (30%), Positives = 27/78 (34%)
Frame = -2
Query: 893 GGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXGA 714
GG G G+ RGS G GG G G G + G GG G+
Sbjct: 24 GGSRGGFGGGGRGGYGGGDRGSFGGGDRGGFRGGRGGGDRGGFRGGRGGGDRGGFGGRGS 83
Query: 713 XRXGXXVXGEXXGGVGXP 660
R G G GG G P
Sbjct: 84 PRGGFGGRGSPRGGRGSP 101
Score = 33.5 bits (73), Expect = 0.22
Identities = 29/92 (31%), Positives = 32/92 (34%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GGGGGG RG RG G GG G G + G + GG G
Sbjct: 9 GGGGGGFRGGRGGD--RGGSRGGFGGGGRGGYGGGDRGSFGGGDRGGFRGGRGGGD--RG 64
Query: 716 AXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAP 621
R G G GG G P G G+P
Sbjct: 65 GFRGGR--GGGDRGGFGGRGSPRGGFGGRGSP 94
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.5 bits (78), Expect = 0.054
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +1
Query: 718 PXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P PP P P P P P PP P RT P PPPPP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
Score = 34.7 bits (76), Expect = 0.094
Identities = 33/131 (25%), Positives = 35/131 (26%), Gaps = 3/131 (2%)
Frame = +3
Query: 540 PXPPPPPXXXXXPPXGXXXXXXXXXXXXXPPTXTKXXGXAWXPNPPXXLPXNXTPLPXG- 716
P PPPPP PP PP+ W P PP P TP P G
Sbjct: 262 PVPPPPPSVTPMPPP-MPPTPGMTPRPPPPPS-----SGMWPPPPPP--PPGRTPGPPGM 313
Query: 717 -XXXGXAPXLXXXHPXFPPXXHPXPXXPXXP-XXSXXPPAXXGXXXPDXFXPXXQXTXPT 890
P P P P P PP P + P P
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 373
Query: 891 PPXXXXXXPXP 923
PP P P
Sbjct: 374 PPSGHGMIPPP 384
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/97 (23%), Positives = 25/97 (25%)
Frame = +2
Query: 536 PPXPPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPXXX 715
PP PP P P P PP +T P P PP P
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWP----PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM 330
Query: 716 XPXGPXPLXXXXAPPFSPXXTPXSXTXXSPXXFXXPP 826
P P P P P P + PP
Sbjct: 331 GGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 367
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/86 (26%), Positives = 25/86 (29%), Gaps = 8/86 (9%)
Frame = +2
Query: 536 PPXP-----PPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXP---P 691
PP P PP P P P GG PP G+ P PP P P
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
Query: 692 KXHXPXXXXPXGPXPLXXXXAPPFSP 769
+ P P PP P
Sbjct: 361 GMYPPPPPSRPPAPPSGHGMIPPPPP 386
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.5 bits (78), Expect = 0.054
Identities = 31/112 (27%), Positives = 32/112 (28%), Gaps = 3/112 (2%)
Frame = +2
Query: 539 PXPPPXXXXXXXPXPXXXXXX---PLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPX 709
P PPP P P+ GG PP P PP PP P
Sbjct: 684 PLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743
Query: 710 XXXPXGPXPLXXXXAPPFSPXXTPXSXTXXSPXXFXXPPRXXGGXXXGPFXP 865
P G P PP P P P PP GG GP P
Sbjct: 744 PPPPPGGLPPISGGPPPPPP---PPGGCPPPP-----PPPPPGGFKGGPPPP 787
Score = 34.7 bits (76), Expect = 0.094
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Frame = +1
Query: 718 PXRAXPPXXXXGTPXFPXPNTXLPHX----PXXPPXXXXPPLPRGXXXRTXXPRXXXKPP 885
P PP G P P P LP P PP PP+ G P PP
Sbjct: 715 PPPGLPPIT--GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 886 PPPP 897
PPPP
Sbjct: 773 PPPP 776
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/80 (28%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Frame = +2
Query: 536 PPXPP--PXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPX 709
PP PP P P P P+ GG PP P PP PP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP--PPPPGGCPP 770
Query: 710 XXXPXGPXPLXXXXAPPFSP 769
P P PP P
Sbjct: 771 PPPPPPPGGFKGGPPPPPPP 790
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Frame = +1
Query: 694 TXXPXLXAPXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXX 873
T P P PP G P P P LP PP PP P G P
Sbjct: 723 TGGPPPPPPPGGLPPIT--GGPPPPPPPGGLPPISGGPPPP--PPPPGGCPPPPPPPPPG 778
Query: 874 X---KPPPPPP 897
PPPPPP
Sbjct: 779 GFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +1
Query: 772 PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P+T PP PP P G T P PPPPPP
Sbjct: 696 PSTSAGGSSALPPITGGPPPPPGLPPITGGP-----PPPPPP 732
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.5 bits (78), Expect = 0.054
Identities = 31/112 (27%), Positives = 32/112 (28%), Gaps = 3/112 (2%)
Frame = +2
Query: 539 PXPPPXXXXXXXPXPXXXXXX---PLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPX 709
P PPP P P+ GG PP P PP PP P
Sbjct: 684 PLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743
Query: 710 XXXPXGPXPLXXXXAPPFSPXXTPXSXTXXSPXXFXXPPRXXGGXXXGPFXP 865
P G P PP P P P PP GG GP P
Sbjct: 744 PPPPPGGLPPISGGPPPPPP---PPGGCPPPP-----PPPPPGGFKGGPPPP 787
Score = 34.7 bits (76), Expect = 0.094
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Frame = +1
Query: 718 PXRAXPPXXXXGTPXFPXPNTXLPHX----PXXPPXXXXPPLPRGXXXRTXXPRXXXKPP 885
P PP G P P P LP P PP PP+ G P PP
Sbjct: 715 PPPGLPPIT--GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 886 PPPP 897
PPPP
Sbjct: 773 PPPP 776
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/80 (28%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Frame = +2
Query: 536 PPXPP--PXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPX 709
PP PP P P P P+ GG PP P PP PP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP--PPPPGGCPP 770
Query: 710 XXXPXGPXPLXXXXAPPFSP 769
P P PP P
Sbjct: 771 PPPPPPPGGFKGGPPPPPPP 790
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Frame = +1
Query: 694 TXXPXLXAPXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXX 873
T P P PP G P P P LP PP PP P G P
Sbjct: 723 TGGPPPPPPPGGLPPIT--GGPPPPPPPGGLPPISGGPPPP--PPPPGGCPPPPPPPPPG 778
Query: 874 X---KPPPPPP 897
PPPPPP
Sbjct: 779 GFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +1
Query: 772 PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P+T PP PP P G T P PPPPPP
Sbjct: 696 PSTSAGGSSALPPITGGPPPPPGLPPITGGP-----PPPPPP 732
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.5 bits (78), Expect = 0.054
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +1
Query: 718 PXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P PP P P P P P PP P RT P PPPPP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
Score = 34.7 bits (76), Expect = 0.094
Identities = 33/131 (25%), Positives = 35/131 (26%), Gaps = 3/131 (2%)
Frame = +3
Query: 540 PXPPPPPXXXXXPPXGXXXXXXXXXXXXXPPTXTKXXGXAWXPNPPXXLPXNXTPLPXG- 716
P PPPPP PP PP+ W P PP P TP P G
Sbjct: 272 PVPPPPPSVTPMPPP-MPPTPGMTPRPPPPPS-----SGMWPPPPPP--PPGRTPGPPGM 323
Query: 717 -XXXGXAPXLXXXHPXFPPXXHPXPXXPXXP-XXSXXPPAXXGXXXPDXFXPXXQXTXPT 890
P P P P P PP P + P P
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 383
Query: 891 PPXXXXXXPXP 923
PP P P
Sbjct: 384 PPSGHGMIPPP 394
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/97 (23%), Positives = 25/97 (25%)
Frame = +2
Query: 536 PPXPPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPXXX 715
PP PP P P P PP +T P P PP P
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWP----PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM 340
Query: 716 XPXGPXPLXXXXAPPFSPXXTPXSXTXXSPXXFXXPP 826
P P P P P P + PP
Sbjct: 341 GGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 377
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/86 (26%), Positives = 25/86 (29%), Gaps = 8/86 (9%)
Frame = +2
Query: 536 PPXP-----PPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXP---P 691
PP P PP P P P GG PP G+ P PP P P
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 370
Query: 692 KXHXPXXXXPXGPXPLXXXXAPPFSP 769
+ P P PP P
Sbjct: 371 GMYPPPPPSRPPAPPSGHGMIPPPPP 396
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.5 bits (78), Expect = 0.054
Identities = 31/112 (27%), Positives = 32/112 (28%), Gaps = 3/112 (2%)
Frame = +2
Query: 539 PXPPPXXXXXXXPXPXXXXXX---PLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPX 709
P PPP P P+ GG PP P PP PP P
Sbjct: 267 PLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 326
Query: 710 XXXPXGPXPLXXXXAPPFSPXXTPXSXTXXSPXXFXXPPRXXGGXXXGPFXP 865
P G P PP P P P PP GG GP P
Sbjct: 327 PPPPPGGLPPISGGPPPPPP---PPGGCPPPP-----PPPPPGGFKGGPPPP 370
Score = 34.7 bits (76), Expect = 0.094
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Frame = +1
Query: 718 PXRAXPPXXXXGTPXFPXPNTXLPHX----PXXPPXXXXPPLPRGXXXRTXXPRXXXKPP 885
P PP G P P P LP P PP PP+ G P PP
Sbjct: 298 PPPGLPPIT--GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Query: 886 PPPP 897
PPPP
Sbjct: 356 PPPP 359
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/80 (28%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Frame = +2
Query: 536 PPXPP--PXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPX 709
PP PP P P P P+ GG PP P PP PP P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP--PPPPGGCPP 353
Query: 710 XXXPXGPXPLXXXXAPPFSP 769
P P PP P
Sbjct: 354 PPPPPPPGGFKGGPPPPPPP 373
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Frame = +1
Query: 694 TXXPXLXAPXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXX 873
T P P PP G P P P LP PP PP P G P
Sbjct: 306 TGGPPPPPPPGGLPPIT--GGPPPPPPPGGLPPISGGPPPP--PPPPGGCPPPPPPPPPG 361
Query: 874 X---KPPPPPP 897
PPPPPP
Sbjct: 362 GFKGGPPPPPP 372
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +1
Query: 772 PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P+T PP PP P G T P PPPPPP
Sbjct: 279 PSTSAGGSSALPPITGGPPPPPGLPPITGGP-----PPPPPP 315
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 35.1 bits (77), Expect = 0.071
Identities = 29/107 (27%), Positives = 30/107 (28%)
Frame = -3
Query: 865 GXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXXPXGRGVXFXG 686
G G GG G G G GC GG GC G G +
Sbjct: 87 GGGCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGG---------GGGYAS 137
Query: 685 XXXGGLGXQAXPXXFVXVGGPXXPPP*RXXPXXPXGGXXXXXGGGGG 545
GG GGP PPP P GG GGG
Sbjct: 138 GGSGGFASAPVSLPAPSYGGP--PPPAPSFSHAPSGGYSSGGSSGGG 182
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 35.1 bits (77), Expect = 0.071
Identities = 23/77 (29%), Positives = 23/77 (29%)
Frame = -3
Query: 895 GGVGXVXXXXGXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXX 716
GG G G G GG G G G GC GG GC G
Sbjct: 92 GGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGS 151
Query: 715 PXGRGVXFXGXXXGGLG 665
G G G GG G
Sbjct: 152 SGGCGGGGGGGCGGGGG 168
Score = 34.7 bits (76), Expect = 0.094
Identities = 34/122 (27%), Positives = 34/122 (27%)
Frame = -2
Query: 893 GGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXGA 714
GGGGG G P G G GG G G G G G GG G
Sbjct: 60 GGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 119
Query: 713 XRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGGXX 534
G G GG G G G G G G GGGG
Sbjct: 120 GGGGCGGGGGGCGGGGGGGCGGGSSGGCGG-------GSSGGCGGGGGGGCGGGGGGGCG 172
Query: 533 XG 528
G
Sbjct: 173 GG 174
Score = 32.7 bits (71), Expect = 0.38
Identities = 32/97 (32%), Positives = 32/97 (32%)
Frame = -3
Query: 829 AGGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXXPXGRGVXFXGXXXGGLGXQAXP 650
AGG G G G GC GG GC P P G G G GG G A P
Sbjct: 25 AGGGGGGGGCGGGCGGGCGGGG--GCA-------PPPAPCGGGCGGGGGGCGGGGGCAPP 75
Query: 649 XXFVXVGGPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
GG GG GGGGG G
Sbjct: 76 PA-PCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCG 111
Score = 32.3 bits (70), Expect = 0.50
Identities = 32/119 (26%), Positives = 32/119 (26%)
Frame = -3
Query: 895 GGVGXVXXXXGXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXX 716
GG G G G GG G G G GC GG GC G
Sbjct: 85 GGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGG-GGCGGGGGGGCGGGS 143
Query: 715 PXGRGVXFXGXXXGGLGXQAXPXXFVXVGGPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
G G G GG G GG P GG GG G G
Sbjct: 144 SGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGG--GGYAVAPSGGGGCGGGGSSGGG 200
Score = 32.3 bits (70), Expect = 0.50
Identities = 32/119 (26%), Positives = 33/119 (27%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GGGGGG G G GG GG G G G G G GG
Sbjct: 125 GGGGGGCGGGGGGGCGGGSSGGCGG-GSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAV 183
Query: 716 AXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGG 540
A G G G G + G G G P G GG G
Sbjct: 184 APSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSG 242
Score = 30.7 bits (66), Expect = 1.5
Identities = 32/128 (25%), Positives = 32/128 (25%)
Frame = -3
Query: 922 GXGXXXXXXGGVGXVXXXXGXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXX 743
G G GG G G G G G G GC G GC
Sbjct: 99 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG 158
Query: 742 XQGAWPXXXPXGRGVXFXGXXXGGLGXQAXPXXFVXVGGPXXPPP*RXXPXXPXGGXXXX 563
G G G G GG G P GG P GG
Sbjct: 159 GGGG----CGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGG-GGYAVAPSGGGGCG 213
Query: 562 XGGGGGXG 539
GG G G
Sbjct: 214 GGGSSGGG 221
Score = 29.9 bits (64), Expect = 2.7
Identities = 27/96 (28%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Frame = -3
Query: 826 GGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXXPXGRGVXFXGXXXG--GLGXQAX 653
GG G G G GG G G G G G G G G +
Sbjct: 238 GGGSGGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSA 297
Query: 652 PXXFVXVGGPXXPPP*RXXPXXPXGGXXXXXGGGGG 545
P P PPP P GG GGGG
Sbjct: 298 PAA-APPPPPPPPPPPAPAPVSSGGGYSEQSSGGGG 332
Score = 28.7 bits (61), Expect = 6.2
Identities = 33/123 (26%), Positives = 33/123 (26%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GGG GG G P G GG GG G G G GG G
Sbjct: 35 GGGCGGGCGGGGGCAPPPAPCG-GGCGGGGGGCGGGGGCAPPPAPCG--GGCGGGGGGCG 91
Query: 716 AXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGGX 537
G G GG G C G G G G G GGG
Sbjct: 92 GGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGS 151
Query: 536 XXG 528
G
Sbjct: 152 SGG 154
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 35.1 bits (77), Expect = 0.071
Identities = 23/77 (29%), Positives = 23/77 (29%)
Frame = -3
Query: 895 GGVGXVXXXXGXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXX 716
GG G G G GG G G G GC GG GC G
Sbjct: 92 GGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGS 151
Query: 715 PXGRGVXFXGXXXGGLG 665
G G G GG G
Sbjct: 152 SGGCGGGGGGGCGGGGG 168
Score = 34.7 bits (76), Expect = 0.094
Identities = 34/122 (27%), Positives = 34/122 (27%)
Frame = -2
Query: 893 GGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXGA 714
GGGGG G P G G GG G G G G G GG G
Sbjct: 60 GGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 119
Query: 713 XRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGGXX 534
G G GG G G G G G G GGGG
Sbjct: 120 GGGGCGGGGGGCGGGGGGGCGGGSSGGCGG-------GSSGGCGGGGGGGCGGGGGGGCG 172
Query: 533 XG 528
G
Sbjct: 173 GG 174
Score = 32.7 bits (71), Expect = 0.38
Identities = 32/97 (32%), Positives = 32/97 (32%)
Frame = -3
Query: 829 AGGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXXPXGRGVXFXGXXXGGLGXQAXP 650
AGG G G G GC GG GC P P G G G GG G A P
Sbjct: 25 AGGGGGGGGCGGGCGGGCGGGG--GCA-------PPPAPCGGGCGGGGGGCGGGGGCAPP 75
Query: 649 XXFVXVGGPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
GG GG GGGGG G
Sbjct: 76 PA-PCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCG 111
Score = 32.3 bits (70), Expect = 0.50
Identities = 32/119 (26%), Positives = 32/119 (26%)
Frame = -3
Query: 895 GGVGXVXXXXGXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXX 716
GG G G G GG G G G GC GG GC G
Sbjct: 85 GGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGG-GGCGGGGGGGCGGGS 143
Query: 715 PXGRGVXFXGXXXGGLGXQAXPXXFVXVGGPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
G G G GG G GG P GG GG G G
Sbjct: 144 SGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGG--GGYAVAPSGGGGCGGGGSSGGG 200
Score = 32.3 bits (70), Expect = 0.50
Identities = 32/119 (26%), Positives = 33/119 (27%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GGGGGG G G GG GG G G G G G GG
Sbjct: 125 GGGGGGCGGGGGGGCGGGSSGGCGG-GSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAV 183
Query: 716 AXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGG 540
A G G G G + G G G P G GG G
Sbjct: 184 APSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSG 242
Score = 30.7 bits (66), Expect = 1.5
Identities = 32/128 (25%), Positives = 32/128 (25%)
Frame = -3
Query: 922 GXGXXXXXXGGVGXVXXXXGXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXX 743
G G GG G G G G G G GC G GC
Sbjct: 99 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG 158
Query: 742 XQGAWPXXXPXGRGVXFXGXXXGGLGXQAXPXXFVXVGGPXXPPP*RXXPXXPXGGXXXX 563
G G G G GG G P GG P GG
Sbjct: 159 GGGG----CGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGG-GGYAVAPSGGGGCG 213
Query: 562 XGGGGGXG 539
GG G G
Sbjct: 214 GGGSSGGG 221
Score = 29.9 bits (64), Expect = 2.7
Identities = 27/96 (28%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Frame = -3
Query: 826 GGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXXPXGRGVXFXGXXXG--GLGXQAX 653
GG G G G GG G G G G G G G G +
Sbjct: 238 GGGSGGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSA 297
Query: 652 PXXFVXVGGPXXPPP*RXXPXXPXGGXXXXXGGGGG 545
P P PPP P GG GGGG
Sbjct: 298 PAA-APPPPPPPPPPPAPAPVSSGGGYSEQSSGGGG 332
Score = 28.7 bits (61), Expect = 6.2
Identities = 33/123 (26%), Positives = 33/123 (26%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GGG GG G P G GG GG G G G GG G
Sbjct: 35 GGGCGGGCGGGGGCAPPPAPCG-GGCGGGGGGCGGGGGCAPPPAPCG--GGCGGGGGGCG 91
Query: 716 AXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGGX 537
G G GG G C G G G G G GGG
Sbjct: 92 GGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGS 151
Query: 536 XXG 528
G
Sbjct: 152 SGG 154
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 35.1 bits (77), Expect = 0.071
Identities = 35/122 (28%), Positives = 35/122 (28%), Gaps = 1/122 (0%)
Frame = -2
Query: 890 GGGGXLXXRGKXVRXXXPRGSG-GXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXGA 714
GGGG G RG G G GG G G W G G GG R G
Sbjct: 41 GGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRG-DWGGNGGGGRGGG 99
Query: 713 XRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGGXX 534
R G GG G GWG G G G GGG
Sbjct: 100 GRGDW--GGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDW 157
Query: 533 XG 528
G
Sbjct: 158 GG 159
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 34.3 bits (75), Expect = 0.12
Identities = 31/108 (28%), Positives = 32/108 (29%), Gaps = 4/108 (3%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXG--XWVXGXGKXGVPXXKXGGXAR 723
GGGGGG PRG G G G G G G G GG
Sbjct: 125 GGGGGGCQCSPSSNTCPPGPRGPPGQAGLDGLPGAPGQPGSNGGAGSNGASEGSAGGCKT 184
Query: 722 XGAXRXGXXVXGEXXGGVGXPSPP--XXFCXGWGAPVXPPVKGEXXGP 585
A G G G P F G GAP P G+ P
Sbjct: 185 CPAGPPGPPGPAGQAGRPGNDGQPGAPSFGGGVGAPGAPGPAGDAGSP 232
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/80 (31%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGG---XXGXXGXWVXGXGKXGVPXXKXGGXA 726
GGGGGG G G GG GG G G + G G G GG
Sbjct: 155 GGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG 214
Query: 725 RXGAXRXGXXVXGEXXGGVG 666
G G G GG G
Sbjct: 215 YGGGGDGGYGPSGGYGGGYG 234
Score = 32.3 bits (70), Expect = 0.50
Identities = 27/90 (30%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GG GGG G G GG GG G G G G G GG G
Sbjct: 168 GGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSG 227
Query: 716 AXRXGXXVXG--EXXGGVGXPSPPXXFCXG 633
G G GG G P C G
Sbjct: 228 GYGGGYGPGGGYGMGGGGGGGGCPNGECRG 257
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXG-XWVXGXGKXGVPXXKXGGXARX 720
GG GGG G G GG GG G G G G G GG
Sbjct: 112 GGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMG 171
Query: 719 GAXRXGXXVXGEXXGGVG 666
G G G GG G
Sbjct: 172 GGGYGGGGDGGYGGGGFG 189
Score = 29.5 bits (63), Expect = 3.6
Identities = 27/105 (25%), Positives = 29/105 (27%)
Frame = -1
Query: 837 PXXRGGXXXWXGXXXVXEXGVXXGEXGGAXXXXRGXGPXGXXKXGXXCXGGXXXGGWGXK 658
P RG + G G GGA G G G GG GG+G
Sbjct: 58 PRTRGQRGPFAAMTGSYGRGGYGGSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGG 117
Query: 657 PXXXVLXXLGGPXXPPRKGXXXXXXGXGXXXXXXXGGGXGGXXXF 523
GG G G G GGG GG F
Sbjct: 118 GYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDF 162
Score = 29.5 bits (63), Expect = 3.6
Identities = 34/127 (26%), Positives = 36/127 (28%), Gaps = 1/127 (0%)
Frame = -3
Query: 922 GXGXXXXXXGGVGXVXXXXGXKX-SGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXX 746
G G GG G + G G GG G G G G GG G
Sbjct: 126 GGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGG 185
Query: 745 XXQGAWPXXXPXGRGVXFXGXXXGGLGXQAXPXXFVXVGGPXXPPP*RXXPXXPXGGXXX 566
G + G G G GG G GG P P GG
Sbjct: 186 ---GGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGG-YGPSGGYGGGYGPGGGYGM 241
Query: 565 XXGGGGG 545
GGGGG
Sbjct: 242 GGGGGGG 248
Score = 29.1 bits (62), Expect = 4.7
Identities = 31/122 (25%), Positives = 34/122 (27%), Gaps = 2/122 (1%)
Frame = -1
Query: 894 GGWGXFXXXPGXXGPXXXPPXXRGGXXXWXGXXXVXEXGVXXGEXGGAXXXXRGXGPXGX 715
GG+ G G GG G + G G GG G GP G
Sbjct: 88 GGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGY 147
Query: 714 XK--XGXXCXGGXXXGGWGXKPXXXVLXXLGGPXXPPRKGXXXXXXGXGXXXXXXXGGGX 541
G GG GG+G GG G G G GGG
Sbjct: 148 GMGGYGGGGGGGGDFGGYGGGGMGG--GGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGY 205
Query: 540 GG 535
GG
Sbjct: 206 GG 207
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 33.1 bits (72), Expect = 0.29
Identities = 28/132 (21%), Positives = 30/132 (22%), Gaps = 4/132 (3%)
Frame = +3
Query: 540 PXPPPPPXXXXXPPXGXXXXXXXXXXXXXPPTXTKXXGXAWXPNPPXXLPXNXTPLPX-- 713
P PPPPP P PP PP P + P P
Sbjct: 24 PQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPP 83
Query: 714 --GXXXGXAPXLXXXHPXFPPXXHPXPXXPXXPXXSXXPPAXXGXXXPDXFXPXXQXTXP 887
P +P P P P P PA P P
Sbjct: 84 LASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPP 143
Query: 888 TPPXXXXXXPXP 923
PP P P
Sbjct: 144 PPPHYPPPPPAP 155
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +1
Query: 772 PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P PP PP P ++ P+ PPPP P
Sbjct: 19 PAATTPQPPPPPP----PPKPAPYVEQSAQPQQTAPPPPPAP 56
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 32.3 bits (70), Expect = 0.50
Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Frame = +1
Query: 715 APXRAXPPXXXXGT-------PXFPXPNTXLP-HXPXXPPXXXXPPLPRGXXXRTXXPRX 870
AP R PP GT P PN P + P P PP P+
Sbjct: 570 APARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAA 629
Query: 871 XXKPPPPPP 897
PPPPPP
Sbjct: 630 PPPPPPPPP 638
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 32.3 bits (70), Expect = 0.50
Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Frame = +1
Query: 715 APXRAXPPXXXXGT-------PXFPXPNTXLP-HXPXXPPXXXXPPLPRGXXXRTXXPRX 870
AP R PP GT P PN P + P P PP P+
Sbjct: 396 APARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAA 455
Query: 871 XXKPPPPPP 897
PPPPPP
Sbjct: 456 PPPPPPPPP 464
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.50
Identities = 32/96 (33%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXW----VXGXGKXGVPXXKXGGX 729
GGGG G RG P G G GG G G W G G G P + GG
Sbjct: 187 GGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYG--GGWGQQGGGGQGGWGGPQQQQGG- 243
Query: 728 ARXGAXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAP 621
G + G G GG G P GWG P
Sbjct: 244 --GGWGQQG----GGGQGGWGGPQQQQQ--GGWGGP 271
Score = 31.1 bits (67), Expect = 1.2
Identities = 30/113 (26%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Frame = -1
Query: 864 GXXGPXXXPPXXRGGXXXWXGXXXVXEXGVXXGEXGGAXXXXRGXGPXGXXKXGXXCXGG 685
G G P RGG + G + G G GG G G G G
Sbjct: 185 GGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGG- 243
Query: 684 XXXGGWGXKPXXXVLXXLGGPXXPPRKGXXXXXXGXGXXXXXXXG---GGXGG 535
GGWG + GGP + G G G G GG GG
Sbjct: 244 ---GGWGQQGGGG-QGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWGG 292
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.50
Identities = 32/96 (33%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXW----VXGXGKXGVPXXKXGGX 729
GGGG G RG P G G GG G G W G G G P + GG
Sbjct: 225 GGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYG--GGWGQQGGGGQGGWGGPQQQQGG- 281
Query: 728 ARXGAXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAP 621
G + G G GG G P GWG P
Sbjct: 282 --GGWGQQG----GGGQGGWGGPQQQQQ--GGWGGP 309
Score = 31.1 bits (67), Expect = 1.2
Identities = 30/113 (26%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Frame = -1
Query: 864 GXXGPXXXPPXXRGGXXXWXGXXXVXEXGVXXGEXGGAXXXXRGXGPXGXXKXGXXCXGG 685
G G P RGG + G + G G GG G G G G
Sbjct: 223 GGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGG- 281
Query: 684 XXXGGWGXKPXXXVLXXLGGPXXPPRKGXXXXXXGXGXXXXXXXG---GGXGG 535
GGWG + GGP + G G G G GG GG
Sbjct: 282 ---GGWGQQGGGG-QGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWGG 330
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 31.9 bits (69), Expect = 0.67
Identities = 27/95 (28%), Positives = 30/95 (31%)
Frame = +3
Query: 546 PPPPPXXXXXPPXGXXXXXXXXXXXXXPPTXTKXXGXAWXPNPPXXLPXNXTPLPXGXXX 725
PPPPP P PPT K P PP +P N +P P
Sbjct: 441 PPPPPSAP--PTIKFPISTGPSYSSTTPPTTPKPA-----PPPPSRIP-NPSPSPQPAEV 492
Query: 726 GXAPXLXXXHPXFPPXXHPXPXXPXXPXXSXXPPA 830
+P P PP P P P PPA
Sbjct: 493 SKSPP---PPPPLPPIATPSSVPPPPPPPPPPPPA 524
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 772 PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P P P+ G + P KP PPPP
Sbjct: 436 PTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPP 477
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.67
Identities = 33/96 (34%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXW----VXGXGKXGVPXXKXGGX 729
GGGG G RG P G GG GG G G W G G G P + GG
Sbjct: 225 GGGGWGGPAQRGGPGAYGGP-GGGGQGGYGGDYG--GGWGQQGGGGQGGWGGPQQQQGG- 280
Query: 728 ARXGAXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAP 621
G + G G GG G P GWG P
Sbjct: 281 --GGWGQQG----GGGQGGWGGPQQQQQ--GGWGGP 308
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.9 bits (69), Expect = 0.67
Identities = 33/96 (34%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXW----VXGXGKXGVPXXKXGGX 729
GGGG G RG P G GG GG G G W G G G P + GG
Sbjct: 187 GGGGWGGPAQRGGPGAYGGP-GGGGQGGYGGDYG--GGWGQQGGGGQGGWGGPQQQQGG- 242
Query: 728 ARXGAXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAP 621
G + G G GG G P GWG P
Sbjct: 243 --GGWGQQG----GGGQGGWGGPQQQQQ--GGWGGP 270
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.67
Identities = 33/96 (34%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXW----VXGXGKXGVPXXKXGGX 729
GGGG G RG P G GG GG G G W G G G P + GG
Sbjct: 225 GGGGWGGPAQRGGPGAYGGP-GGGGQGGYGGDYG--GGWGQQGGGGQGGWGGPQQQQGG- 280
Query: 728 ARXGAXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAP 621
G + G G GG G P GWG P
Sbjct: 281 --GGWGQQG----GGGQGGWGGPQQQQQ--GGWGGP 308
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.5 bits (68), Expect = 0.88
Identities = 22/78 (28%), Positives = 24/78 (30%)
Frame = -1
Query: 891 GWGXFXXXPGXXGPXXXPPXXRGGXXXWXGXXXVXEXGVXXGEXGGAXXXXRGXGPXGXX 712
GWG G G GG W G G G GG G G G
Sbjct: 54 GWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGG---GGRGGGGGGGGGRGGGGGG 110
Query: 711 KXGXXCXGGXXXGGWGXK 658
+ G GG GG G +
Sbjct: 111 RGGGGGGGGGRGGGGGGR 128
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -2
Query: 893 GGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXG 756
GGGG RG RG GG GG G G G G+ G
Sbjct: 85 GGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGG 130
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = -1
Query: 768 GEXGGAXXXXRGXGPXGXXKXGXXCX-GGXXXGGWGXKPXXXVLXXLGGPXXPPRKGXXX 592
G GG G G G + G GG GGWG GG G
Sbjct: 38 GRSGGWGRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGG---GNWGGNGGGGNGGGGR 94
Query: 591 XXXGXGXXXXXXXGGGXGG 535
G G GGG GG
Sbjct: 95 GGGGGGGGGRGGGGGGRGG 113
Score = 28.3 bits (60), Expect = 8.2
Identities = 24/77 (31%), Positives = 25/77 (32%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
G GGGG G+ G G GG G G G G G GG G
Sbjct: 56 GRGGGGSGWGGGRG-------GGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGG 108
Query: 716 AXRXGXXVXGEXXGGVG 666
R G G GG G
Sbjct: 109 GGRGGGGGGGGGRGGGG 125
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 31.5 bits (68), Expect = 0.88
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGG 732
GGGGGG + G + G+GG GG G G G G+ G GG
Sbjct: 503 GGGGGGHVASAGGGISAM--TGAGGEAPGGGAGGRGGGAHGGAGRGGGYQGGRGG 555
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 31.5 bits (68), Expect = 0.88
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGG 732
GGGGGG + G + G+GG GG G G G G+ G GG
Sbjct: 503 GGGGGGHVASAGGGISAM--TGAGGEAPGGGAGGRGGGAHGGAGRGGGYQGGRGG 555
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.1 bits (67), Expect = 1.2
Identities = 33/123 (26%), Positives = 35/123 (28%), Gaps = 16/123 (13%)
Frame = +2
Query: 575 PXPXXXXXXPLRGGXXG-------PPNXNKTXWXGLXPQPPXXXPPKXHXPXXXXPXG-- 727
P P P GG G PP+ G PP PP P P G
Sbjct: 152 PGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGP 211
Query: 728 PXPLXXXXAP-------PFSPXXTPXSXTXXSPXXFXXPPRXXGGXXXGPFXPGXXXNXP 886
P AP PF+P P S P F G GPF P
Sbjct: 212 TGPFDPSGAPPSGGPPGPFNPSGAPPS--GGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 269
Query: 887 HPP 895
PP
Sbjct: 270 GPP 272
>Z78537-4|CAB01721.1| 569|Caenorhabditis elegans Hypothetical
protein W04G3.8 protein.
Length = 569
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/61 (29%), Positives = 21/61 (34%)
Frame = +1
Query: 715 APXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPP 894
AP P P P + P PP P LP ++ PR PPPP
Sbjct: 52 APRAPAPTIAQEKAIAVPQPQQPIA-LPPAPPAAQQPVLPVTNGDQSFAPRVGAAIPPPP 110
Query: 895 P 897
P
Sbjct: 111 P 111
>Z68014-14|CAA92030.1| 569|Caenorhabditis elegans Hypothetical
protein W04G3.8 protein.
Length = 569
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/61 (29%), Positives = 21/61 (34%)
Frame = +1
Query: 715 APXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPP 894
AP P P P + P PP P LP ++ PR PPPP
Sbjct: 52 APRAPAPTIAQEKAIAVPQPQQPIA-LPPAPPAAQQPVLPVTNGDQSFAPRVGAAIPPPP 110
Query: 895 P 897
P
Sbjct: 111 P 111
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 766 PXPNTXL--PHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P N L P P PP P RT P PPPPPP
Sbjct: 1686 PVDNVRLIRPITPAQPPITQSPVPSEPVVVRTPSPVPQPTPPPPPP 1731
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +1
Query: 733 PPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPP 894
PP P P P P PP PP P P PPPPP
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPP-PMCPPPPPPPPPPMCPPPPPP 80
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +1
Query: 718 PXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P PP P P P + PP PP P P PPPPPP
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPP-------PPPPPPMCPPPPPP 80
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +1
Query: 766 PXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P PP PP P P PPPPPP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP 70
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.7
Identities = 34/119 (28%), Positives = 35/119 (29%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GGGGGG G G GG GG G G G G GG G
Sbjct: 320 GGGGGGDFPAGGGG-GGYSTGGGGGRADSGGAAGGAG---GAGGYSG-----GGGGGGGG 370
Query: 716 AXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGG 540
A G G GG +P AP P G G G GG G
Sbjct: 371 AAAGGGYNAGGGGGGAPQAAPAPQAAP---APAAPAGGGYNAGGGGGAGGGGGYAGGAG 426
Score = 29.1 bits (62), Expect = 4.7
Identities = 28/109 (25%), Positives = 29/109 (26%)
Frame = -3
Query: 865 GXKXSGXXXPXXAGGXXEXXGXXGXXGXGCXXGGKXGCXXXXQGAWPXXXPXGRGVXFXG 686
G G GG G G G GG G G G +
Sbjct: 320 GGGGGGDFPAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGGGGAAAGGGYNA 379
Query: 685 XXXGGLGXQAXPXXFVXVGGPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
GG QA P P P P P GG GGGG G
Sbjct: 380 GGGGGGAPQAAP-------APQAAPA----PAAPAGGGYNAGGGGGAGG 417
Score = 28.7 bits (61), Expect = 6.2
Identities = 26/104 (25%), Positives = 26/104 (25%)
Frame = -2
Query: 839 PRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXGAXRXGXXVXGEXXGGVGXP 660
P G GG G G G G GG G G G GG
Sbjct: 318 PAGGGGGGDFPAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGG---GGGGGGAAAG 374
Query: 659 SPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGGGGXXXG 528
G GAP P P GGGG G
Sbjct: 375 GGYNAGGGGGGAPQAAPAPQAAPAPAAPAGGGYNAGGGGGAGGG 418
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 3.6
Identities = 29/124 (23%), Positives = 35/124 (28%), Gaps = 4/124 (3%)
Frame = +2
Query: 536 PPXPPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXP--QPPXXXP-PKXHXP 706
P P P P P G GP + NK G +P P P P
Sbjct: 955 PNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSP 1014
Query: 707 XXXXPXGPXPLXXXXAPPFSPXXTPXSXTXXSPXXFXXPPRXXGGXXXGPFXPG-XXXNX 883
P GP P P +P + P P + GP P N
Sbjct: 1015 NGPSPNGPSPNGPSPNGPTPNWPSPNGPSPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNG 1074
Query: 884 PHPP 895
P+ P
Sbjct: 1075 PNEP 1078
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.5 bits (63), Expect = 3.6
Identities = 34/117 (29%), Positives = 36/117 (30%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGGXARXG 717
GG GGG G V P G GG GG G G + G P GG + G
Sbjct: 39 GGCGGGAPAAGGYAVAPQAPIG-GGYAQPGGGYGGAGGF--GGAYQAAPAI-GGGGSYAG 94
Query: 716 AXRXGXXVXGEXXGGVGXPSPPXXFCXGWGAPVXPPVKGEXXGPXGXXXXXXXXXGG 546
A G G GG P G A P G G G GG
Sbjct: 95 AGPIGGGFGG-AQGGYAGAGPIGGGAQGGYAGAGPIGGGAQGGYAGAGPIGGGAQGG 150
>Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 628 GPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
GP PPP P G GGGGG G
Sbjct: 213 GPDGPPPPPSNPYGGSGNDNGSSGGGGGYG 242
>Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 628 GPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
GP PPP P G GGGGG G
Sbjct: 213 GPDGPPPPPSNPYGGSGNDNGSSGGGGGYG 242
>Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 628 GPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
GP PPP P G GGGGG G
Sbjct: 213 GPDGPPPPPSNPYGGSGNDNGSSGGGGGYG 242
>Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 628 GPXXPPP*RXXPXXPXGGXXXXXGGGGGXG 539
GP PPP P G GGGGG G
Sbjct: 213 GPDGPPPPPSNPYGGSGNDNGSSGGGGGYG 242
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +2
Query: 665 PQPPXXXPPKXHXPXXXXPXGPXPLXXXXAPPFSPXXTPXSXTXXSPXXFXXPP 826
P PP PP P P P AP P P SP PP
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPP 1392
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 766 PXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P P PP P P G P P PP P
Sbjct: 149 PPPCQPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGPPGP 192
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 766 PXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P P PP P P G P P PP P
Sbjct: 148 PPPCKPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGPPGP 191
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +1
Query: 733 PPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
PP P P P +P P PP P P PPPPPP
Sbjct: 67 PPVPNGFIPPPPGPG-GIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = -2
Query: 896 GGGGGGXLXXRGKXVRXXXPRGSGGXXXXGGXXGXXGXWVXGXGKXGVPXXKXGG 732
GGGG G G G+GG GG G G G G G G
Sbjct: 804 GGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAG 858
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +1
Query: 733 PPXXXXGTPXFPXPNTXLPHXPXXPPXXXX--PPLPRGXXXRTXXPRXXXKP-PPPPP 897
PP P P P + P P P PP PR P PPPPP
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Frame = +2
Query: 539 PXPPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXN----KTXWXGLXPQPPXXXPPKXHXP 706
P PPP P P G GPP + + P+P PP H P
Sbjct: 100 PPPPPQGADTWRGAPP-----PAHHGHFGPPGHHFQGPPQHFPPGPPRPHFPGPPGPHRP 154
Query: 707 XXXXPXGPXPLXXXXAPPFS 766
P P P PP S
Sbjct: 155 PEHYPGPPRPQAPAAPPPKS 174
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = -1
Query: 837 PXXRGGXXXWXGXXXVXEXGVXXGEXGGAXXXXRGXGPXGXXKXGXXCXGGXXXGGWG 664
P RGG G G G GG R G G G GG GG+G
Sbjct: 209 PSQRGGSGGGGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYG 266
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 766 PXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPP 891
P P + P PP PP P+G P KPPPP
Sbjct: 707 PPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPN---KPPPP 745
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 772 PNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
P P P P P+ G + P KP PPPP
Sbjct: 429 PTRVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKPAPPPP 470
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = +1
Query: 715 APXRAXPPXXXXGTPXFPXPNTXLPHXPXXPPXXXXPPLPRGXXXRTXXPRXXXKPPPPP 894
AP P P P P L P PP+P T P PPPPP
Sbjct: 487 APPPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAP----TPPPPP 542
Query: 895 P 897
P
Sbjct: 543 P 543
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Frame = +1
Query: 754 TPXFPXPNTXL-----PHXPXX--PPXXXXPPLPRGXXXRTXXPRXXXKPPPPPP 897
TP P P L P P PP PP+P P P PPPP
Sbjct: 96 TPPLPRPPGNLNPVQQPQIPVQRTPPQCPPPPVPHPPQITQMAPILPTSPAPPPP 150
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/68 (30%), Positives = 23/68 (33%)
Frame = +2
Query: 536 PPXPPPXXXXXXXPXPXXXXXXPLRGGXXGPPNXNKTXWXGLXPQPPXXXPPKXHXPXXX 715
PP PP P P R G GPP + G P+PP P P
Sbjct: 112 PPGPPGPPGRDGRPGA------PGRPGNPGPPGRDGALLPGPPPKPPCQKCPPG-PPGPA 164
Query: 716 XPXGPXPL 739
P GP L
Sbjct: 165 GPPGPKGL 172
>U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical
protein F31E8.1 protein.
Length = 249
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 92 LCLNVRALNLHKLTMNFAKILSFVF 166
+CLNV + N+H ++ N A L F F
Sbjct: 15 VCLNVSSFNIHSISSNCATPLQFSF 39
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/93 (24%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Frame = +2
Query: 623 GPPNXNKTXWXGLXPQPPXXXPPKXHXPXXXXPXGPXPLXXXXAPPFSPXXTPXSXTXXS 802
GPP+ PQP P + H P GP P P P S
Sbjct: 120 GPPSPGPVD-PSEDPQPSVE-PSEDHQPSGPPSPGPVDPSEDPQPSVEPSEDPQPSGPPS 177
Query: 803 PXXF--XXPPRXXGGXXXGPFXPGXXXNXPHPP 895
P P+ G GP P + PP
Sbjct: 178 PGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPP 210
>AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family
protein 31 protein.
Length = 747
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 387 YILKLTSRLNNTSIYGSRFKDHFPIALAEPRTSIAGPALTMP 262
++L L+ L S Y K HFP TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +2
Query: 659 LXPQPPXXXPPKXHXPXXXXPXGPXPLXXXXAPPFSPXXTPXS 787
L P PP PP P P P AP +P T S
Sbjct: 825 LPPPPPPNPPPAPQPPSSAASLTPAPSAAQNAPSIAPSTTEAS 867
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,238,448
Number of Sequences: 27780
Number of extensions: 384949
Number of successful extensions: 3065
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2355
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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