Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_L16
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    26   6.4  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          26   8.4  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 348 PRSSLKNSPVVTTFTKKSLVALSQSPEDLPSPHFPCPK 235
           P+S   +SP   + T+KS V      +++ S HF  P+
Sbjct: 442 PKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVPE 479


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 173 PITSQFSRVS-PTPSRYSRLCHLGQGKWGE 259
           P++ + S    P+P+   R  HL +GKW E
Sbjct: 297 PVSEEVSPTRLPSPTSARRASHLSEGKWDE 326


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 333 KNSPVVTTFTKKSLVALSQSPEDLPSPHF 247
           KN PVV  FT+ +L  +   PED+    F
Sbjct: 53  KNQPVVGFFTEDALKMVGTKPEDVMQVSF 81


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = -2

Query: 124 YKECSG*QHLG--IHFEL*Q-VSLLETRMSKILRIPYSEIVXE 5
           +K CS  +HL   +  EL Q +S++E  +SK+  I YS+I+ E
Sbjct: 165 HKNCSEIEHLPSKVKSELQQKLSVMENSISKVEGICYSKILRE 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,369
Number of Sequences: 5004
Number of extensions: 55003
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)