Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_L16
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    33   0.21 
AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    31   0.85 
Z81520-3|CAB04222.1|  214|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    29   4.5  
U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 200 SPTPSRYSRLCHLGQGKWGEGRSSGLWERATKDFLVK 310
           S T  R+ R+ HL Q  WG  +S GLW+ A    L++
Sbjct: 101 SDTKDRFERITHLNQ--WGNTKSFGLWDSALDSKLIE 135


>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 102 NTLEYILNCDRFRCSRQEC 46
           NT++  +NCD FRCS  EC
Sbjct: 149 NTIDTPMNCDHFRCSFNEC 167


>Z81520-3|CAB04222.1|  214|Caenorhabditis elegans Hypothetical
           protein F31B9.3 protein.
          Length = 214

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 125 CVNAQVSMPPGYAEKYPITSQFSRVSPTPSRYSRLCHL 238
           CV+  V  P G  ++ P+     + +P PS Y+RLC++
Sbjct: 100 CVDMYVDFPDG--QRMPVDEFVKQYAPGPSFYNRLCNM 135


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 345 RSSLKNSPVVTTFTKKSLVALSQSPEDLPSPHFPCPK 235
           R++  N PVV   TKK   AL +  +++   H   PK
Sbjct: 59  RTATANKPVVPKLTKKQQAALEKITKNITQEHVTLPK 95


>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 71  LSQFKMYSKVLLSAALLVCV-NAQVSMPPGYAEKYPITSQFSRVSPTPSR 217
           L+Q K Y+K L      V   +A   +  G AE +   +QFS +  TPSR
Sbjct: 75  LAQKKAYAKKLKEYEKQVAEESAAAKIAEGQAETFTKRTQFSAIESTPSR 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,277,787
Number of Sequences: 27780
Number of extensions: 342744
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)