Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_L15
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 34 0.13
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 31 1.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.2
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.6
06_03_1310 + 29238644-29240260 30 2.8
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402... 30 2.8
01_03_0005 + 11568545-11569119,11569179-11569191 30 2.8
03_05_0067 - 20460206-20460703,20461255-20461530 28 8.6
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 753 PPPPXXXXFFXSPPPPXXFFFXXXPP 676
PPPP F +PPPP FF PP
Sbjct: 46 PPPPVIRVFAAAPPPPRAAFFAPPPP 71
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 753 PPPPXXXXFFXSPPPPXXFFFXXXPP 676
PPP F +PPPP FF PP
Sbjct: 55 PPPQVIRVFAAAPPPPPAAFFAAVPP 80
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 753 PPPPXXXXFFXS--PPPPXXFFFXXXPP 676
PPPP F + PPPP FF PP
Sbjct: 54 PPPPQVIRVFAAAPPPPPAAFFAAVPPP 81
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = -1
Query: 768 GGXKXPPPPXXXXFFXSPPPPXXFFFXXXPPXXKKXXXXXGGXXXKKKXKNXFXPPPFXX 589
GG + PP P PPP PP GG PPP
Sbjct: 1131 GGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPR 1190
Query: 588 XXG--GGPKXXGGXP 550
G GGP G P
Sbjct: 1191 GHGGVGGPPTPPGAP 1205
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/80 (28%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Frame = -1
Query: 792 GRXXPXXXGGXKXPP-PPXXXXFFXSPPPPXXFFFXXXPPXXKKXXXXXGGXXXKKKXKN 616
G P GG PP PP F PPP PP + GG
Sbjct: 1147 GVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAP- 1205
Query: 615 XFXPPPFXXXXGGGPKXXGG 556
PP GG P GG
Sbjct: 1206 --APPMPPGVPGGPPPPPGG 1223
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 244 PPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXFGGPXG 372
PPPP G PPP + P K PS PP GG G
Sbjct: 336 PPPPPPKGP---PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 232 AXKKPPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPP 345
A PPPP PPP P +KG P PP
Sbjct: 322 AAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 780 PXXXGGXKXPPPPXXXXFFXSPPPP 706
P GG K P PP + SPPPP
Sbjct: 487 PPQGGGGKLPFPPVHGVAYSSPPPP 511
>04_03_1004 +
21637910-21638269,21638424-21638579,21640108-21640202,
21640478-21640505,21640725-21640752,21642353-21642363
Length = 225
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 238 KKPPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPP 345
++ PPP G + PPP PK S + PP
Sbjct: 9 RRGPPPRPAGRAQRPPPPHSVAPKRASSSSSSTTPP 44
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = -3
Query: 727 FFXPPPPXXFFFXXXPPPXKKKXXXXGGXXXKKKXKKXFXPPPFXXXXGGGAXXXGGG 554
++ PPPP PP GG PPP+ GGG+ GGG
Sbjct: 54 YYPPPPPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGG-GGGSSTGGGG 110
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 753 PPPPXXXXFFXSPPPPXXFFFXXXPP 676
PPPP PPPP +F PP
Sbjct: 14 PPPPPQYFQAGPPPPPPQYFQGAHPP 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,018,357
Number of Sequences: 37544
Number of extensions: 576088
Number of successful extensions: 1794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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