Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_L15
(882 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 0.83
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 30 1.9
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 30 1.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 25 3.1
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 29 4.4
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 28 7.7
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 28 7.7
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 28 7.7
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Frame = +1
Query: 244 PPPPFXXGXLEXX-------PPPXXRXPKNXSKGKXPSXPPGXXFGGP 366
PPPP G L PPP P+N S P PP GGP
Sbjct: 542 PPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGP 589
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 244 PPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXFG 360
PPPP L PPP P P PPG G
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLMG 601
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 238 KKPPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXFGGP 366
+ PPPP PPP R P P PP FG P
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 328
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 238 KKPPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXFGGP 366
+ PPPP PPP R P P PP FG P
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 338
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 244 PPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXFGGP 366
PPPP + PPP P P PPG GGP
Sbjct: 745 PPPPGGLPPISGGPPPPP-PPPGGCPPPPPPPPPGGFKGGP 784
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 780 PXXXGGXKXPPPPXXXXFFXSPPPPXXFFFXXXPP 676
P GG PPPP PPPP F PP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 244 PPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXF 357
PPPP G PPP P KG P PP F
Sbjct: 759 PPPPPPPGGCPPPPPPP---PPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 244 PPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXFGGP 366
PPPP + PPP P P PPG GGP
Sbjct: 745 PPPPGGLPPISGGPPPPP-PPPGGCPPPPPPPPPGGFKGGP 784
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 780 PXXXGGXKXPPPPXXXXFFXSPPPPXXFFFXXXPP 676
P GG PPPP PPPP F PP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 244 PPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXF 357
PPPP G PPP P KG P PP F
Sbjct: 759 PPPPPPPGGCPPPPPPP---PPGGFKGGPPPPPPPGMF 793
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 768 GGXKXPPPPXXXXFFXSPPPP 706
GG PPPP ++ PPPP
Sbjct: 676 GGQGPPPPPQGQQYYGGPPPP 696
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 768 GGXKXPPPPXXXXFFXSPPPP 706
GG PPPP ++ PPPP
Sbjct: 676 GGQGPPPPPQGQQYYGGPPPP 696
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 244 PPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXFGGP 366
PPPP + PPP P P PPG GGP
Sbjct: 328 PPPPGGLPPISGGPPPPP-PPPGGCPPPPPPPPPGGFKGGP 367
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 780 PXXXGGXKXPPPPXXXXFFXSPPPPXXFFFXXXPP 676
P GG PPPP PPPP F PP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 244 PPPPFXXGXLEXXPPPXXRXPKNXSKGKXPSXPPGXXF 357
PPPP G PPP P KG P PP F
Sbjct: 342 PPPPPPPGGCPPPPPPP---PPGGFKGGPPPPPPPGMF 376
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 25.0 bits (52), Expect(2) = 3.1
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = -1
Query: 726 FXSPPP--PXXFFFXXXPPXXKKXXXXXGGXXXKKKXKNXFXPPPFXXXXGGGPKXXGGX 553
F PPP P + PP ++ G + + F PP GG P+ G
Sbjct: 293 FGGPPPSGPPSEYGGYAPPQQQQQQF--GAPPPQGAPQQGFGAPPQGPPQGGPPQGSFGA 350
Query: 552 PXXKKF 535
P ++F
Sbjct: 351 PPPQQF 356
Score = 23.0 bits (47), Expect(2) = 3.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -1
Query: 753 PPPPXXXXFFXSPPPP 706
PPP F +PPPP
Sbjct: 255 PPPQQQQQQFQAPPPP 270
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -1
Query: 765 GXKXPPPPXXXXFFXSPPPPXXFFFXXXPP 676
G PPPP FF +PPP PP
Sbjct: 320 GKPNPPPPSAGYFFQAPPPAPASSSSTVPP 349
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 247 PPPFXXGXLEXXPPPXXRXPKNXSKGKXP-SXPPGXXFGGP 366
PPPF + PPP P + G P + PP GP
Sbjct: 89 PPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGP 129
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 247 PPPFXXGXLEXXPPPXXRXPKNXSKGKXP-SXPPGXXFGGP 366
PPPF + PPP P + G P + PP GP
Sbjct: 112 PPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGP 152
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 247 PPPFXXGXLEXXPPPXXRXPKNXSKGKXP-SXPPGXXFGGP 366
PPPF + PPP P + G P + PP GP
Sbjct: 362 PPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGP 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,179
Number of Sequences: 27780
Number of extensions: 347106
Number of successful extensions: 925
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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