Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_L10
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 36 0.005
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.017
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.36
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.3
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 4.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.8
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual 26 7.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.7
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +3
Query: 180 WVREFAIRSSALAQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEIER*SFKKKYHRK 359
++R F RSS ++ S K ++D +R+T + + V+EQ ++ K+ H
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664
Query: 360 DVIVRP 377
DV VRP
Sbjct: 665 DVYVRP 670
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/52 (34%), Positives = 20/52 (38%)
Frame = +2
Query: 689 PPPF*KIXXPPPQKXPPXXKXXXXKNXXXPPXPPPPPXXXLSXXXXPPPPXP 844
PPP + P P P PP PPPPP + PPPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGG---PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.20
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +3
Query: 558 VXPNXPPXXGPPKIKGXPPXXGAXGXPPPPPFXP---XGGXXXFFXSP 692
V P P GPP PP G PPPPP P GG + +P
Sbjct: 751 VPPPAPIMGGPPP-PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/35 (31%), Positives = 12/35 (34%)
Frame = +2
Query: 734 PPXXKXXXXKNXXXPPXPPPPPXXXLSXXXXPPPP 838
PP P P PPP + PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 689 PPPF*KIXXPPPQKXPPXXKXXXXKNXXXPPXPPPPPXXXLS 814
PPP + PPP PP P PPPPP +S
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG-------PPPPPPPPPAVS 786
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 576 PXXGPPKIKGXPPXXGAXGXPPPPP 650
P P I PP G PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.36
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 776 PPXPPPPPXXXLSXXXXPPPP 838
PP PPPPP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 30.3 bits (65), Expect = 0.36
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 781 PPPPPPXXXXFXXXXPPPPXP 843
PPPPPP PPPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 29.9 bits (64), Expect = 0.47
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 779 PXPPPPPXXXLSXXXXPPPPXP 844
P PPPPP PPPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.5 bits (63), Expect = 0.62
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 775 PXPPPPPPXXXXFXXXXPPPPXP 843
P PPPPP F PPP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 776 PPXPPPPPXXXLSXXXXPPPP 838
PP PPPP S PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +2
Query: 719 PPQKXPPXXKXXXXKNXXXPPXPPPP 796
PP PP + PP PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +2
Query: 716 PPPQKXPPXXKXXXXKNXXXPPXPPP--PPXXXLSXXXXPPPPXP 844
PPP + PP K + PP PPP P PP P P
Sbjct: 1192 PPPSEAPPVPK----PSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 716 PPPQKXPPXXKXXXXKNXXXPPXPPPPPXXXLSXXXXPPP 835
PPP PP PP PPPP S P P
Sbjct: 1709 PPPMSVPPPPSAPPMP--AGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 564 PNXPPXXGPPKIKGXPPXXGAXGXPPPP 647
P PP PP P G PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 689 PPPF*KIXXPPPQKXPPXXKXXXXKNXXXPPXPPPPPXXXLSXXXXPPPP 838
PPP P P K PP P PP L P PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +2
Query: 716 PPPQKXPPXXKXXXXK--NXXXPPXPPPPP 799
PPP PP + PP PPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Frame = +3
Query: 573 PPXXGPPKIKGXPPXXGAXGXPPPPPFXPXGGXXXFFXS---PXXFKKFXXRPPKXPPLX 743
PP PP + PPPPP P + + P+ PP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPP-- 225
Query: 744 XKXXXXKXCXPXPXPPPP 797
K P P PPPP
Sbjct: 226 --TYTPKQADPLPAPPPP 241
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 148 GSTAHNH-YANDGDKYYFCKIHF 83
G ++H + + ND ++Y+CK HF
Sbjct: 200 GFSSHTYKFVNDKGEFYYCKWHF 222
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +2
Query: 680 FFXPPPF*KIXXPPPQKXPPXXKXXXXKNXXXPP--XPPPPP 799
F P P K PPP + P PP PP PP
Sbjct: 39 FMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPP 80
>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 406 QYPXFSISLLGLTITSFL*YFFLKLYRSISLCST 305
QY +I GL TS +FFL+ +R IS ST
Sbjct: 5 QYKEKAIIGTGLITTSIGGFFFLRRFRRISNAST 38
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +2
Query: 716 PPPQKXPPXXKXXXXKNXXXPPX----PPPPPXXXLSXXXXPPPP 838
PPP PP + + PP PPPPP PPP
Sbjct: 337 PPP---PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,652
Number of Sequences: 5004
Number of extensions: 51932
Number of successful extensions: 357
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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