Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_L07
(1007 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.26
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.59
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.59
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.78
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.5
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.1 bits (67), Expect = 0.26
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Frame = -1
Query: 995 GGXXGEXXGPGGXXXGXXXXGXGXXGXEGXGXG-----RGXRGG 879
GG G G GG G G G G G G G RG RGG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 995 GGXXGEXXGPGGXXXGXXXXGXGXXGXEGXGXGRGXRG 882
GG G GPGG G G G G G G G G
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.59
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 892 PRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXPPHP 1002
P P P P P P P PP P + PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.5 bits (63), Expect = 0.78
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 892 PRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXPPHP 1002
P P P P P P P PPG + PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.78
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +1
Query: 880 PPRXPRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXPPHP 1002
PP P P PS P P P PP P S PP P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSAGLPPVP 1230
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +1
Query: 883 PRXPRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXPPHP 1002
P P P PS P P P PP P S PP P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPV---PSGAPPVPKPSVAAPPVP 1153
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +1
Query: 883 PRXPRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXPPHP 1002
P P P PS P P P PP P S PP P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPA---PSGAPPVPKPSVAAPPVP 1172
Score = 26.2 bits (55), Expect = 7.3
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Frame = +1
Query: 883 PRXPRPXPXPS--XPXXPXPXXXXPXXXPPG----PXXSPXXPPHP 1002
P P P P PS P P P P P G P S PP P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 898 PXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXPPHP 1002
P P PS P P P PP P S PP P
Sbjct: 1103 PVPKPSVAVPPVPA---PSGAPPVPKPSVAAPPVP 1134
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +1
Query: 880 PPRXPRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXP-PHP 1002
PP P P P P P P P PPG P P P P
Sbjct: 500 PPGVPLP-PIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFP 540
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 880 PPRXPRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXPPHP 1002
PP+ P P P P P P P GP +P PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP--MPAGPPSAP-PPPLP 1736
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = +1
Query: 880 PPRXPRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXPPHP 1002
PP P P P P PP P +P PP P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +1
Query: 880 PPRXPRPXPXPSXPXXPXPXXXXPXXXPPGPXXSPXXP 993
PP P P S P P PP P +P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.149 0.520
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,490
Number of Sequences: 5004
Number of extensions: 22424
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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