Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_L06
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 109 5e-25
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 108 1e-24
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.044
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.058
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.058
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 31 0.18
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 31 0.18
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.23
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.31
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.31
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 30 0.54
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.54
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.54
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.71
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.94
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.94
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 3.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 4.5
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 27 5.0
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 109 bits (262), Expect = 5e-25
Identities = 51/81 (62%), Positives = 62/81 (76%)
Frame = +3
Query: 150 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 329
+ V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 27 VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86
Query: 330 HXIPLVKVDNNKKLGEWAGLC 392
PL+KV + K LGEWAGLC
Sbjct: 87 SETPLIKVADPKVLGEWAGLC 107
Score = 32.3 bits (70), Expect = 0.10
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 419 RKLSGCSCVVIQDFGEETPAXDVL 490
RK+ GCSCV + D+GE++ A L
Sbjct: 116 RKVVGCSCVAVTDYGEDSAALQKL 139
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 108 bits (260), Expect = 1e-24
Identities = 51/81 (62%), Positives = 62/81 (76%)
Frame = +3
Query: 150 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 329
+ V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Query: 330 HXIPLVKVDNNKKLGEWAGLC 392
PLVKV + K LGEWAGLC
Sbjct: 90 SQTPLVKVADPKILGEWAGLC 110
Score = 32.7 bits (71), Expect = 0.076
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 419 RKLSGCSCVVIQDFGEETPAXDVL 490
RK+ GCSCV + D+GE++ A L
Sbjct: 119 RKVVGCSCVAVTDYGEDSVALQTL 142
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 577 PPPPXPPXPPPXPP 618
PPPP P PP PP
Sbjct: 273 PPPPATPSQPPRPP 286
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 556 KIPXHXXPPPPXPPXPPPXPPXPXXPP 636
+IP P P PP PP P PP
Sbjct: 222 EIPPTYTPKQADPLPAPPPPPPPTLPP 248
Score = 27.1 bits (57), Expect(2) = 0.044
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 577 PPPPXPPXPPPXPPXPXXPPLP 642
PPPP PP PP P+P
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMP 259
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 576 PPPPXPPXPPPXSPXPAXPP 635
PPPP PP PP S + P
Sbjct: 238 PPPPPPPTLPPQSTNTSQLP 257
Score = 25.0 bits (52), Expect(2) = 0.044
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 559 IPXHXXPPPPXPPXP 603
+P PPPP PP P
Sbjct: 183 LPSDYNPPPPPPPPP 197
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.058
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 562 PXHXXPPPPXPPXPPPXPPXPXXPPLP 642
P PPPP P P PP PPLP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 30.7 bits (66), Expect = 0.31
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 577 PPPPXPPXPPPXPPXPXXPP 636
PPP P PP PP P PP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPP 1728
Score = 30.3 bits (65), Expect = 0.41
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +3
Query: 561 PQXXXPPPPXP----PXPPPXSPXPAXPP 635
PQ P PP P P PP P PA PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 29.1 bits (62), Expect = 0.94
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 583 PPXPPXPPPXPPXPXXPPLP 642
P PP P PP P PP+P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP 1724
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Frame = +3
Query: 561 PQXXXPPPPXPPXPPP----XSPXPAXPPFTEGLXGXXP 665
PQ PP P PPP P P+ PP G P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +3
Query: 561 PQXXXPPPPX-PPXP--PPXSPXPAXP 632
P PPPP PP P PP +P P P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 580 PPPXPPXPPPXPPXPXXPPLPRV*XAPXLXXXTSXXVWAP 699
PPP P PP P P P P P L ++ V P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.1 bits (72), Expect = 0.058
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 562 PXHXXPPPPXPPXPPPXPPXPXXPP 636
P + PPPP P PP P P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 32.3 bits (70), Expect = 0.10
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 561 PQXXXPPPPXPPXPPPXSPXPAXPP 635
P PPPP P PP P P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 577 PPPPXPPXPPPXPPXPXXPPLP 642
P P PP PPP P PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP 27
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +1
Query: 577 PP--PPXPPXPPPXPPXPXXPPLP 642
PP PP PP PP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 31.5 bits (68), Expect = 0.18
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 213 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHXIPLVKVDNNKKLG 374
+GL+ ++ ++A L ++A + D + ALC + +P V N +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +3
Query: 156 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHX 335
+N + + +K A ++ G+ E KA+ K + L +LA + + LC ++
Sbjct: 37 LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96
Query: 336 IPLVKVDNNKKLGE 377
+P + + + LGE
Sbjct: 97 VPYLYTVSKELLGE 110
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 641 GKGGXXGX-GGXGGGXGGXGGGG 576
G+GG G GG GGG GG GGG
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGG 39
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 641 GKGGXX-GXGGXGGGXGGXGGG 579
G+GG G GG GG GG GGG
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGG 31
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 638 KGGXXGXGGXGGGXGGXGGG 579
+GG G GG GG GG GG
Sbjct: 44 RGGRGGRGGARGGRGGSSGG 63
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 641 GKGGXX-GXGGXGGGXGGXGG 582
G+GG G GG GG GG GG
Sbjct: 39 GRGGARGGRGGRGGARGGRGG 59
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 641 GKGGXXG-XGGXGGGXGGXGG 582
G+GG G GG GG GG GG
Sbjct: 46 GRGGRGGARGGRGGSSGGRGG 66
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 634 GGXAGXGXXGGGXGGXGGGG 575
G G G GGG GG GGG
Sbjct: 20 GFNGGRGGFGGGRGGARGGG 39
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -3
Query: 641 GKGGXXGX-GGXGGGXGGXGGG 579
G+GG G GG GG GG GG
Sbjct: 49 GRGGARGGRGGSSGGRGGAKGG 70
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 634 GGXAGXGXXGGGXGGXGGG 578
G G G GG GG GGG
Sbjct: 13 GSRGGRGGFNGGRGGFGGG 31
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 637 KGGXAGXGXXGGGXGGXGGG 578
+GG G G GG GG GG
Sbjct: 44 RGGRGGRGGARGGRGGSSGG 63
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 559 IPXHXXP-PPPXPPXPPPXPPXPXXPPLP 642
+P P PP P P P P P PPLP
Sbjct: 114 VPEEPLPGEPPLPDEPVPEEPLPGEPPLP 142
Score = 30.3 bits (65), Expect = 0.41
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 559 IPXHXXP-PPPXPPXPPPXPPXPXXPPLP 642
+P P PP P P P P P PPLP
Sbjct: 98 VPEEPLPREPPLPNEPVPEEPLPGEPPLP 126
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +3
Query: 561 PQXXXP-PPPXPPXPPPXSPXPAXPPFTE 644
P+ P PP P P P P P PP +
Sbjct: 99 PEEPLPREPPLPNEPVPEEPLPGEPPLPD 127
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 641 GKGGXXGX-GGXGGGXGGXGGG 579
G GG G GG GGG GG GGG
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGG 250
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 641 GKGGXXGX-GGXGGGXGGXGGG 579
G GG G GG GGG GG GGG
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGG 257
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 641 GKGGXXGX-GGXGGGXGGXGGG 579
G GG G GG GGG GG GGG
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGG 264
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 634 GGXAGXGXXGGGXGGXGGG 578
G G G GGG GG GGG
Sbjct: 232 GFEGGPGGFGGGPGGFGGG 250
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 634 GGXAGXGXXGGGXGGXGGG 578
G G G GGG GG GGG
Sbjct: 239 GFGGGPGGFGGGLGGFGGG 257
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 634 GGXAGXGXXGGGXGGXGGG 578
G G G GGG GG GGG
Sbjct: 246 GFGGGLGGFGGGPGGFGGG 264
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 29.9 bits (64), Expect = 0.54
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 580 PPPXPPXPPPXPPXPXXPPLPRV*XAPXL 666
PPP PP P P P P +P V P L
Sbjct: 356 PPPPPPMPAPIYNVPNVPTVPTVSPNPFL 384
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.54
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 641 GKGGXXGXGGXGGGXGGXGGG 579
G+GG G GG GGG G GG
Sbjct: 458 GRGGFGGRGGFGGGRGRGRGG 478
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.54
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 577 PPPPXPPXPPPXPPXPXXPPLPRV 648
PPPP PP P P PP P V
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Frame = +1
Query: 562 PXHXXPPPPXPP------XPPPXPPXP 624
P PPPP PP PPP PP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 576 PPPPXPPXPPPXSPXPAXPP 635
PPPP PP P P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Frame = +1
Query: 577 PPPPXPP--XPPPXP-PXPXXPPLP 642
PPPP P P P P P P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP 756
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 562 PXHXXPPPPXPPXPPPXPPXP 624
P PP P PPP PP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Frame = +3
Query: 561 PQXXXPPPPXPP-------XPPPXSPXPA 626
P PPPP PP PPP P PA
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 580 PPPXPPXPPPXPPXPXXPPLP 642
PPP PP P P PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.71
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 579 PPPXPPXPPPXSPXPAXPPFT 641
PPP PP P P + PA P T
Sbjct: 5 PPPPPPAPAPAAAAPAPPLMT 25
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = +1
Query: 577 PPPPXPPXPPPXPPXP-XXPPLP 642
PP PP P PP P PP+P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIP 161
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +1
Query: 580 PPPXPPXPPPXPPXPXXPPLPRV*XAPXLXXXTSXXVWAP 699
PP P P PP P P P + AP + +AP
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAP 223
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +1
Query: 562 PXHXXPPPPX--PPXPPPXPPXP-XXPPLP 642
P PP P PP P PP P PP+P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.94
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 577 PPPPXPPXPPPXPPX-PXXPPLPRV*XAP 660
P PP P PP P P PPLP AP
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 576 PPPPXPPXPPPXSPXPAXPP 635
PP P PP PP +P P+ PP
Sbjct: 415 PPVPTPPSLPPSAP-PSLPP 433
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +1
Query: 559 IPXHXXPPPPXPPXPPPXPPXPXXPP 636
+P PP PP P PP P P
Sbjct: 459 LPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Frame = +1
Query: 577 PPPPXPPXPPPXP-PXPXXP 633
P PP P PPP P P P P
Sbjct: 468 PLPPAAPAPPPAPAPAPAAP 487
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 577 PPPPXPPXPPPXPPXPXXPP 636
PP P PP PP P P PP
Sbjct: 415 PPVPTPPSLPPSAP-PSLPP 433
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 579 PPPXPPXPPPXSPXPAXPPFTEGLXGXXP 665
PP PP PP P A P G P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 559 IPXHXXPPPPXPPXPPPXPPXPXXPPLPRV*XAP 660
+P PP P P PP P P P AP
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.94
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 559 IPXHXXPPPPXPPXPPPXPPXPXXPPLPR 645
+P PP P P PP P PP+P+
Sbjct: 1026 LPSADAPPIPVPSTAPPVPIPTSTPPVPK 1054
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 562 PXHXXPPPPXPPXP-PPXPPXPXXPPLPR 645
P PP P P PP PP PP+P+
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 562 PXHXXPPPPXPPXPPPXP-PXPXXPPLPRV*XAP 660
P PP P P PP P P PP+P AP
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +1
Query: 562 PXHXXPPPPXPPXP-PPXPPXPXXPPLP 642
P PP P P PP PP PP+P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 562 PXHXXPPPPXPPXPPPXP-PXPXXPPLPRV*XAP 660
P PP P P PP P P PP+P AP
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +1
Query: 577 PPPPXPPXPPPXPPXPXXPPLPRV*XAPXLXXXTSXXVWAPTXTXK 714
P PP PP P PP+P AP + ++ P T K
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK 1235
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +1
Query: 562 PXHXXPPPPXPPXPPPXP-PXPXXPPLP 642
P PP P P PP P P PP+P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 562 PXHXXPPPPXPPXPPPXPPXPXXPPLPR 645
P P P P PP P PP+P+
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +1
Query: 577 PPPPXPPXPPPXP-PXPXXPPLPR 645
PP P P PP P P PP+P+
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPK 1106
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -3
Query: 641 GKGGXXGX-GGXGGGXGGXGGGGXXXLG 561
G+GG G GG GG GG GG G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFG 163
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -1
Query: 646 PSVKGGXAGX-GXXGGGXGGXGGGGXXXWG 560
P+ +GG G G GG GG GG +G
Sbjct: 134 PAGRGGRGGFRGGRGGSRGGFGGNSRGGFG 163
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 583 PPXPPXPPPXPPXP 624
PP P PPP PP P
Sbjct: 806 PPPAPLPPPAPPLP 819
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 562 PXHXXPPPPXPPXPPPXP 615
P PP P PP PP P
Sbjct: 802 PFKAPPPAPLPPPAPPLP 819
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +1
Query: 559 IPXHXXPPPPXPPXPP--PXPPXPXXPPLPRV 648
IP P PP PP P PP P P +P +
Sbjct: 486 IPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNL 517
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.6 bits (46), Expect(2) = 4.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 586 PXPPXPPPXP 615
P PP PPP P
Sbjct: 905 PTPPPPPPLP 914
Score = 22.2 bits (45), Expect(2) = 4.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 592 PPXPPPXPPXP 624
P PPP PP P
Sbjct: 942 PAFPPPPPPPP 952
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 644 LGKG-GXXGXGGXGG-GXGGXGGGGXXXLGI 558
+G G G G GG GG G GG GG GI
Sbjct: 224 MGGGLGGAGLGGLGGAGLGGFGGANNATAGI 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,530
Number of Sequences: 5004
Number of extensions: 54591
Number of successful extensions: 647
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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