Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_L06
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    29   0.080
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   4.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 0.080
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 576 PPPPXPPXPPPXSPXP 623
           PP P PP PPP S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 28.3 bits (60), Expect = 0.11
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 577 PPPPXPPXPPPXPPXPXXPPLPRV 648
           PP P PP PPP    P    L ++
Sbjct: 338 PPKPAPPPPPPSSSGPDSAKLDKI 361



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +3

Query: 522 YMLXLIHISXXKNPQXXXPPPPXPPXPPPXS 614
           Y L  I +     P    PPPP P    P S
Sbjct: 325 YCLVNIVLGDSDTPPKPAPPPPPPSSSGPDS 355


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect(2) = 1.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 564  QXXXPPPPXPP 596
            Q   PPPP PP
Sbjct: 1352 QQQPPPPPPPP 1362



 Score = 21.4 bits (43), Expect(2) = 1.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 585  PXPPXPPPXS 614
            P PP PPP S
Sbjct: 1355 PPPPPPPPSS 1364


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 561 PQXXXPPPPXPPXPPPXSPXPAXPP 635
           PQ   PP P    PPP  P P  PP
Sbjct: 34  PQRGSPPNPSQ-GPPPGGP-PGAPP 56


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 601 GXGGXGGGGXXXWGFLX*LIWI 536
           G G  GG G    G L  L+WI
Sbjct: 143 GDGSPGGNGGPRNGLLPLLVWI 164


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 601 GXGGXGGGGXXXWGFLX*LIWI 536
           G G  GG G    G L  L+WI
Sbjct: 143 GDGSPGGNGGPRNGLLPLLVWI 164


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 453 WMTTQEQPDNFRCL 412
           W++ QEQ   FRC+
Sbjct: 138 WISVQEQVPRFRCI 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,170
Number of Sequences: 438
Number of extensions: 6019
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)