Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_L04
(1235 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.035
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.14
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.19
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.33
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.76
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 3.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 4.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 5.4
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 26 9.4
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 34.3 bits (75), Expect = 0.035
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 861 GRXEARXAXGXGXAGRPG--RGXXGAXGGGRGXGXARQXXRRGXEGGR 998
GR +R G GR G G GA GGGRG + R G GGR
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGR 57
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +3
Query: 876 RXAXGXGXAGRPGRGXXGAXGGGRGXGXARQXXRRGXEGGR 998
R G G G G G GA GGRG + R G GGR
Sbjct: 25 RGGFGGGRGGARGGGRGGA-RGGRGGRGGARGGRGGSSGGR 64
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 888 GXGXAGRPG-RGXXGAXGGGRGXGXARQXXRRGXEGG 995
G GR G RG G GG RG R G +GG
Sbjct: 34 GARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/56 (37%), Positives = 21/56 (37%)
Frame = +1
Query: 589 PGXTXPXXAXGAAXPTXXPXXPPTXPPPPPXXXXPPPXGPXXXXXPXPGXXPXXXP 756
P T P AA P PT PPPPP PPP P P P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSA---PT-PPPPPMSVPPPPSAPPMPAGP-PSAPPPPLP 1736
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.14
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -3
Query: 1011 RRXXXAPPRXPAXXXASLXPXLSPPPXRXXXPGXXVLPXPPPXXXAPXPSPXXGAXXGXX 832
RR PP +SL P PPP R G +P PP AP P P A
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPP--PPPPRSNAAGS--IPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 831 GPXSXPPL 808
P PPL
Sbjct: 375 QP---PPL 379
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Frame = -1
Query: 905 SCPPXPXRXPRLXPP---PSXGXAXGPXVPPPXRXSSXXP 795
S PP P P PP PS P +PPP + P
Sbjct: 228 SAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSP 267
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = +1
Query: 589 PGXTXPXXAXGAAXPTXXPXXPPTXPPPPPXXXXPPPXGPXXXXXPXPGXXPXXXP 756
P P +A P+ P PP+ P P PP P P P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAPP 468
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = -3
Query: 996 APPRXPAXXXASLXPXLSPPPXRXXXPGXXVLPXPPPXXXAPXPSP 859
APP P A+ S P G P PP AP P+P
Sbjct: 435 APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +1
Query: 643 PXXPPTXPPPPPXXXXPPPXGPXXXXXPXPGXXPXXXP 756
P PP+ P PP P P P P P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = -2
Query: 253 PXPAPXXPPXXXXXXVSXXPPPXLXXFXXPXXXLVSGXLPXPXPXRPPPPXTPXPXGGXP 74
P PAP P V+ P P P +G P P P PP P P G P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP--VPKPSVGVP 1208
Score = 30.3 bits (65), Expect = 0.58
Identities = 18/62 (29%), Positives = 21/62 (33%)
Frame = -3
Query: 993 PPRXPAXXXASLXPXLSPPPXRXXXPGXXVLPXPPPXXXAPXPSPXXGAXXGXXGPXSXP 814
P PA + P PP P V P PPP P P+P G P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPV--PKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Query: 813 PL 808
P+
Sbjct: 1238 PV 1239
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = -3
Query: 996 APPRXPAXXXASLXPXLSPPPXRXXXPGXXVLPXPPPXXXAPXPSPXXGAXXGXXGPXSX 817
APP A P S P V P PPP P P P G P +
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP-VPPPSTA 1216
Query: 816 PPL 808
PP+
Sbjct: 1217 PPV 1219
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +1
Query: 793 RGXXXEXRXGGGTXGPXAXPXXGGGXRRGXRXGXGG 900
RG R GGG GP P G G R G R G G
Sbjct: 103 RGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRG 138
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.76
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +1
Query: 604 PXXAXGAAXPTXXPXXPPTXPPPPPXXXXPPPXGPXXXXXPXPGXXPXXXP 756
P PT P P PP P PPP P P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Frame = -3
Query: 954 PXLSPPPXRXXXPGXXVLPXPPP--XXXAPXPSPXXGAXXGXXGPXSXPP 811
P PP P +P PPP P P P G P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Frame = -3
Query: 288 PPXPXXFFXLXXXPXP-PXXPPXPXXXXXXAPPPXXWXXSXPPP 160
PP P P P P PP P PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = -2
Query: 997 RPPSXPRRXXCLAXPXPLPPPXAPXXPRPGRPAXPXP 887
+ P P + P P P P P P G P P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = -2
Query: 166 PXXXLVSGXLPXPXPXRPPPPXTPXPXGGXPX*AXRGXGAPXXXXXXP 23
P +V P P P PP P P P G G P P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -1
Query: 743 GXXPGXGXXXXXGPXGGGXXXXGGGGGXVGGXXGXXVG 630
G PG G G GGG GGG G GG G G
Sbjct: 227 GGGPG-GFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 734 PGXGXXXXXGPXGGGXXXXGGGGGXVGGXXGXXVG 630
PG G G GGG GGG G GG G G
Sbjct: 237 PG-GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Frame = +1
Query: 643 PXXPPTXPPPP---PXXXXPPPXGP 708
P PP PPPP P PPP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 652 PPTXPPPPPXXXXPPPXGPXXXXXPXPG 735
P PPPPP PP P P PG
Sbjct: 6 PGNPPPPPPPPGFEPPSQP--PPPPPPG 31
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 4.1
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Frame = -3
Query: 996 APPRXPAXXX--ASLXPXLSPPPXRXXXPGXXVLPXPPPXXXAPXPS---PXXGAXXGXX 832
APP PA + L P S PP P P P P PS P
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 831 GPXSXPPLXXXAP 793
P S P L P
Sbjct: 183 SPPSAPSLPSAVP 195
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 828 DPRXRSXPXXXGRXEARXAXGX-GXAGRPGRGXXGAXGGGRGXGXARQXXRRGXEGGRXX 1004
DP+ R G E A G G PG G G G G G G G GG
Sbjct: 57 DPQRRKLYDQYGITEGNAAPPPPGAEGGPGAGFGGFPGAGPG-GARTFHFNMGGPGGAQF 115
Query: 1005 XXAXEP 1022
A +P
Sbjct: 116 FSASDP 121
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 890 PXRXPRLXPPPSXGXAXGPXVPPPXRXSSXXP 795
P R + PPPS + P PPP +S P
Sbjct: 41 PVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAP 72
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 900 AGRPGRGXXGAXGGGRGXGXARQXXRRG 983
+G+ GRG G GGRG G +RG
Sbjct: 360 SGQRGRGGRGFYRGGRGRGGFFNRSKRG 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.143 0.481
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,121
Number of Sequences: 5004
Number of extensions: 27311
Number of successful extensions: 226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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