Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_L03
         (1347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.2  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   7.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   7.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   7.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   7.5  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 119 PXFXPPLLCXPXXGVPPGGXXXGXGXXXAXPPXPGG 12
           P   PP+   P    PPGG     G     PP PGG
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 119 PXFXPPLLCXPXXGVPPGGXXXGXGXXXAXPPXPGG 12
           P   PP+   P    PPGG     G     PP PGG
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 119 PXFXPPLLCXPXXGVPPGGXXXGXGXXXAXPPXPGG 12
           P   PP+   P    PPGG     G     PP PGG
Sbjct: 315 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 13  PPGKGGXAXXXPXPLXXPPGGTPKXGXQXRGGXN 114
           PP  GG     P P   PP G P  G     G N
Sbjct: 435 PPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGN 468


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 10  PPPGKGGXAXXXPXPLXXPPGGTPKXGXQXRGG 108
           PPP +   A     P   PP G+P  G   RGG
Sbjct: 331 PPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGG 363


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 10  PPPGKGGXAXXXPXPLXXPPGGTPKXGXQXRGG 108
           PPP +   A     P   PP G+P  G   RGG
Sbjct: 352 PPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGG 384


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 10  PPPGKGGXAXXXPXPLXXPPGGTPKXGXQXRGG 108
           PPP +   A     P   PP G+P  G   RGG
Sbjct: 337 PPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGG 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.143    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,833,855
Number of Sequences: 27780
Number of extensions: 99468
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3788030792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)