Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K24
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.13 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   4.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 30/103 (29%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
 Frame = +2

Query: 614 RNGPTXXPPLVFXXPGXLXPXPGGSCXXSN--CXPXLAPGLSTXPXXPNLNGRXNSAVXS 787
           R+ P   PP      G   P    S   SN    P   PG S     P  N    S    
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417

Query: 788 PDLPXXDPXXPPLHXSFLSXGXPPATXSRIPXXPGDXPPPXAP 916
           P  P   P  PP     L    PP+     P  P    PP AP
Sbjct: 418 PTPPSLPPSAPP----SLPPSAPPSLPMGAPAAP--PLPPSAP 454



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
 Frame = +2

Query: 617 NGPTXXPPLVFXXPGXLXPX--PGGSCXXSNCXPXLAPGLSTXPXXPNLNGRXNSAVXSP 790
           + P   PP +   PG   P   P G+   ++  P   P        P+L     SA   P
Sbjct: 386 SNPPAPPPAI---PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL---PPSA--PP 437

Query: 791 DLPXXDPXXPPLHXSF-LSXGXPPATXSRIPXXPGDXPPPXAP 916
            LP   P  PPL  S  ++   P    +  P  P    PP AP
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 417 PXXXLVXIFHXSVPTYLPXEFXLEIIXPFXHFTPGLQR 530
           P   L    H +  T +  ++ L+I  PF  F PG+ R
Sbjct: 316 PRFILYSTTHIAPETEIIGDWTLDISHPFRQFAPGMSR 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,695
Number of Sequences: 5004
Number of extensions: 30922
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)