Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_K24
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818... 35 0.079
12_01_0849 + 7948693-7948996,7949829-7950610 31 0.97
06_01_0486 - 3455030-3455770 31 1.7
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 29 3.9
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 5.2
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 29 6.8
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 9.0
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 9.0
>03_05_0524 -
25181432-25181483,25181565-25181691,25181776-25181826,
25182159-25182314,25182405-25182905,25182999-25183713,
25183797-25183867,25183974-25184103,25185706-25186167
Length = 754
Score = 35.1 bits (77), Expect = 0.079
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 791 DLPXXDPXXPPLHXSFLSXGXPPATXSRIPXXPGDXPPP 907
++P P PPLH S + PPAT + P PPP
Sbjct: 342 EVPALSPSPPPLHGSVMPPPLPPATVEPVISAPMVEPPP 380
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 31.5 bits (68), Expect = 0.97
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 758 NGRXNSAVXSPD--LPXXDPXXPPLHXSFLSXGXPPATXSRIPXXPGDXPPP 907
+G A+ +P LP P P SFL G PPA + +P P P
Sbjct: 93 DGEVKQALDAPSRVLPVAAPPLPASSFSFLHAGHPPAAPTALPERRSAVPAP 144
>06_01_0486 - 3455030-3455770
Length = 246
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Frame = +2
Query: 671 PXPGGSCXXSNCXPXLAPGLS----TXPXXPNLNGRXNSAVXSPDLPXXDPXXPPLHXSF 838
P P C +C P P T P P+ + P P P PP +
Sbjct: 66 PPPSPRCP--SCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPY 123
Query: 839 LSXGXPPATXSRIPXXPGDXPPPXAP 916
+ PP+ +P PPP P
Sbjct: 124 VPPPTPPSPPPYVPPPTPPSPPPYVP 149
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +2
Query: 776 AVXSPDLPXXDPXXPPLHXSFLSXGXPPATXSRIPXXPGDXPPP 907
AV P LP P P + L PPA + P P PPP
Sbjct: 29 AVVPPSLPTTTPPAPTVVAPPLPTTPPPAVVAPSPPLPPLTPPP 72
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Frame = +2
Query: 710 PXLAPGLSTXPXXPNLNGRXNSAVXSPDLPXXDPXXPPLHXSF--LSXGXPPATXSRIPX 883
P + PG P P +A P PP S+ + G PP S P
Sbjct: 389 PAVPPGPPAVPAPPTYPPADPAAGGYTSQPYMGAPPPPPPGSYAPVPWGQPPPYASYPPP 448
Query: 884 XPGD---XPPPXAP 916
PG PPP AP
Sbjct: 449 PPGSSMYNPPPPAP 462
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 686 SCXXSNCXPXLAPGLS--TXPXXPNLN-GRXNSAVXSPDLPXXDPXXPPLHXS 835
SC S P L+PGLS P P N R ++AV P L P P + S
Sbjct: 649 SCLPSPTHPALSPGLSAAAYPNNPLQNQSRRSAAVPDPWLELSQPRPPSPYGS 701
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/84 (26%), Positives = 25/84 (29%)
Frame = +2
Query: 665 LXPXPGGSCXXSNCXPXLAPGLSTXPXXPNLNGRXNSAVXSPDLPXXDPXXPPLHXSFLS 844
L P P G P P P P+ + + P P PPL S
Sbjct: 1122 LPPLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPP 1181
Query: 845 XGXPPATXSRIPXXPGDXPPPXAP 916
PP S P P P P P
Sbjct: 1182 PPPPPPLPSGPPPQPAPPPLPIQP 1205
Score = 28.3 bits (60), Expect = 9.0
Identities = 29/99 (29%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Frame = +2
Query: 623 PTXXPPLVFXXPGXLXPXPGGSCXXSNCXPXLAPGLSTXPXXPNLNGRXNSAVXSPDLPX 802
P PPL P P P G + P P L P P SP LP
Sbjct: 1126 PDGPPPLPLDAPPP-PPLPEGPPPLPSDSPPCQPPL---PPSPPPATPPPPPPLSPSLPP 1181
Query: 803 XDPXXPPLHXSFLSXGXPPA-TXSRIPXXPGDXPPPXAP 916
P P L G PP +P P PPP P
Sbjct: 1182 PPPPPP------LPSGPPPQPAPPPLPIQPPPIPPPPVP 1214
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 9.0
Identities = 25/97 (25%), Positives = 30/97 (30%)
Frame = +2
Query: 602 PL*XRNGPTXXPPLVFXXPGXLXPXPGGSCXXSNCXPXLAPGLSTXPXXPNLNGRXNSAV 781
PL G PP V G P P P G++ P P R + V
Sbjct: 1140 PLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPP----RGHGGV 1195
Query: 782 XSPDLPXXDPXXPPLHXSFLSXGXPPATXSRIPXXPG 892
P P P PP+ PP +P PG
Sbjct: 1196 GGPPTPPGAP-APPMPPGVPGGPPPPPGGRGLPAPPG 1231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,111,809
Number of Sequences: 37544
Number of extensions: 215700
Number of successful extensions: 495
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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