Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K23
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    80   4e-16
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   1.2  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    29   1.2  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    26   8.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   8.6  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
 Frame = +1

Query: 217 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARD-KTKVAITADIPFS 393
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+R+  +K+A+ A I FS
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFS 70

Query: 394 XXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 501
                             DWLRVV++    YELRY+
Sbjct: 71  GRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 387 RNVCGDSDFRLIPGDDNVIA*VICFALNFDVFLQVFLEVTY 265
           R + G+S F ++P     +   IC  L   V +++F++ T+
Sbjct: 300 RGLVGESSFAVLPNIPPALTFYICLGLQITVLIKLFIKPTW 340


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 201 LDAFAADFATLHSFFASLLVQLGFLS 124
           +D +  DFAT H+ + + L  +GFLS
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 32 FLKILAIFAVFTVTCSTRVRL 94
          F KIL+ F++F +TC  ++ L
Sbjct: 3  FFKILSFFSLFVITCFAKLDL 23


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 217 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 327
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,436
Number of Sequences: 5004
Number of extensions: 37861
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)