Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K21
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    88   2e-18
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    29   1.2  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   2.8  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   6.5  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   8.5  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   8.5  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 43/67 (64%), Positives = 52/67 (77%)
 Frame = +1

Query: 106 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWAFASWVVILGS 285
           AVIK  DMSE+MQQ+A+  A QA+EKF IEKDIAAFIK+EFDKK++PTW         GS
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTW-HCIVGRNFGS 60

Query: 286 YVTHETR 306
           +VTHE+R
Sbjct: 61  FVTHESR 67


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -2

Query: 218 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFCFG*MTNFSKS 39
           L N   SF + N   +      A+ C+SSL+       L    L W+C C    T     
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC---QTYEGGL 195

Query: 38  *GIPYSE 18
            G+PY+E
Sbjct: 196 SGVPYAE 202


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 163 ATQALEKFNIEKDIAAFIKK--EFDKKYNPTWAFASWVVILGSYVTHETRPLHLLST 327
           A + LEK   +K +   I +  E  ++ +P  +FA  V IL   VT   RPLHLL T
Sbjct: 229 AKKLLEKQENQKSVEVKISEITESSQQIDPDKSFAEVVHIL---VTTIRRPLHLLCT 282


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = -1

Query: 303 SLVCHIRAQNYDPRCKCPGRIVFLVKFFLDECSYVLFNVKFLERLSCTVNSILLHLFAHV 124
           SL C    Q +    K P R +FL   +L +   ++ +  + ER+    + +L +L   V
Sbjct: 101 SLFCLSVVQYFQIFSKDP-RAIFLSALYLIDPIRLVTSFNYHERIVVNSHMLLFYLKPFV 159

Query: 123 SILYDCFAITHLVLGLFLLRINDKF 49
             L     +T ++L   + ++N  F
Sbjct: 160 IALPVLIGVTCILLSFLVYKMNKAF 184


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  DFEKFVIYPKQKQTQDKMCDRKAVIKNADM 129
           + +K + Y +Q Q + K  +RK ++K ADM
Sbjct: 7   ELQKLMAYTEQLQEECKSRERKLIMKFADM 36


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 67  KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE 195
           +QKQ + +   RK   K   M+E+ +    +   + L K N+E
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVE 569


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 178 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 65
           ++L L + QH+   L SC ++L +L  H  CL  F++ S
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,669
Number of Sequences: 5004
Number of extensions: 57998
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)