Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K18
         (1287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.065
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    33   0.065
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.11 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.11 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.46 

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.5 bits (73), Expect = 0.065
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +1

Query: 208 PXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXPXXL 336
           P  P S L  P S+P R P   P  PA  PP P   P  P  L
Sbjct: 130 PPTPQSELRPPTSAPPR-PSIPPPSPASAPPIPSKAPPIPSSL 171



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 208 PXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPL 309
           P  P + +  PPS+P       P PP   PP PL
Sbjct: 174 PAQPAAPVKSPPSAPSLPSAVPPMPP-KVPPPPL 206


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 33.5 bits (73), Expect = 0.065
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = -2

Query: 353 RXGXSERXXGXEGXGRGXGGXGAGGXGXXXGXRXGEEGGXEXXEXG 216
           R G      G  G GRG    G GG G   G R G  GG    + G
Sbjct: 25  RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 30.7 bits (66), Expect = 0.46
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = -2

Query: 353 RXGXSERXXGXEGXGRGXGGXGAGGXGXXXGXRXGEEGGXEXXEXGRXG 207
           R G      G  G   G GG G G  G   G R G  GG       R G
Sbjct: 8   RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 184 PXGRRSXXPXLPXSXLSXP-PSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
           P G  +  P  P + ++ P P+     P   P  PAP PP P P P+ P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP-PPAPAPAPAAP 487



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 208 PXLPXSXL-SXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXPXXLSLXP 348
           P LP S   S PPS+P   P   P  P P PP     P  P  +   P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAP-PLPPSAPIAPPLPAGMPAAP 467



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 238 PPSSPX-RXPXXLPXPPAPXPPXPLPXPS 321
           PPS P  R P  +P   AP PP P+P PS
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPP-PIPPPS 260



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +1

Query: 208 PXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
           P  P    S PPS P   P  LP      PP P   P  P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 199  SXXPXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            S  P +P   +  PP  P      +P P A  PP P+P    P
Sbjct: 1195 SEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +1

Query: 199  SXXPXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            S  P +P      PP  P      +P P    PP P P  + P
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 184  PXGRRSXXPXLPXSXLSXPP-SSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            P    S  P +P   ++ PP  +P      +P P A  PP P P  + P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 208  PXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            P +P   ++ PP         +P P    PP P+P  + P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +1

Query: 184  PXGRRSXXPXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            P    S  P +P   ++ PP         +P P    PP P P  + P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +1

Query: 199  SXXPXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            S  P +P   ++ PP         +P P    PP P P    P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 208  PXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            P +P    + P  +P      +P P A  PP P P    P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 199  SXXPXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            S  P  P + +   P    + P  +P P A  PP P+P  + P
Sbjct: 1001 STSPAAPLARVPPVPKLSSKAPP-VPLPSADAPPIPVPSTAPP 1042


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = +1

Query: 181  APXGRRSXXPXLPXSXLSXPPSSPXRXPXXLPXPPAP-XPPXPLPXPSXP 327
            AP    S  P  P S      S+P   P  +  PP P  PP P   PS P
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +1

Query: 181  APXGRRSXXPXLPXSXLSXPPSSPXRXPXXLPXPPAPXPPXPLPXPSXP 327
            AP    +  P  P   +  PPS+P         PP P P    P    P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = +1

Query: 217  PXSXLSXPPSSPXRX-PXXLPXPPAPXPPXPLPXPSXPXXLSLXP 348
            P   +S PP  P    P  +  P  P PP  +P P     +   P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,258
Number of Sequences: 5004
Number of extensions: 22029
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)