Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_K17
(984 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.35
01_06_0046 + 25943183-25943590 31 1.9
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 4.3
03_06_0289 - 32870581-32871238,32871271-32871275 29 5.7
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 29 7.5
01_06_1377 + 36764461-36765339 29 7.5
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 7.5
06_03_1153 - 28047125-28047751 28 9.9
03_03_0193 - 15312568-15312753,15312811-15312933,15313112-153131... 28 9.9
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 28 9.9
01_05_0641 - 23881429-23881836 28 9.9
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 9.9
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 33.1 bits (72), Expect = 0.35
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 600 GXXKKKXPPPPPXXFFXPPPP 662
G +++ PPPPP ++ PPPP
Sbjct: 75 GPPQQQQPPPPPQMYYQPPPP 95
>01_06_0046 + 25943183-25943590
Length = 135
Score = 30.7 bits (66), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 621 PPPPPXXFFXPPPP 662
PPPPP ++ PPPP
Sbjct: 56 PPPPPYYYYSPPPP 69
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 29.5 bits (63), Expect = 4.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 621 PPPPPXXFFXPPPP 662
PPPP FF PPPP
Sbjct: 58 PPPPRAAFFAPPPP 71
>03_06_0289 - 32870581-32871238,32871271-32871275
Length = 220
Score = 29.1 bits (62), Expect = 5.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 621 PPPPPXXFFXPPPP 662
PPPPP + PPPP
Sbjct: 205 PPPPPPVHYAPPPP 218
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 28.7 bits (61), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 621 PPPPPXXFFXPPPP 662
PPPPP + PPPP
Sbjct: 697 PPPPPSISYHPPPP 710
>01_06_1377 + 36764461-36765339
Length = 292
Score = 28.7 bits (61), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 621 PPPPPXXFFXPPPP 662
PPPPP + PPPP
Sbjct: 173 PPPPPPAYSAPPPP 186
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 28.7 bits (61), Expect = 7.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 678 FFFXXGGGEXXKXXGGGGGGXF 613
FF GGG + GGGGGG +
Sbjct: 41 FFVGGGGGGRGRGGGGGGGGGY 62
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 609 KKKXPPPPPXXFFXPPPP 662
KKK PPPP + P PP
Sbjct: 117 KKKKKPPPPLPLYRPRPP 134
>03_03_0193 -
15312568-15312753,15312811-15312933,15313112-15313134,
15313196-15313349,15314443-15314754
Length = 265
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 674 FFXXGGGRXKKXXGGGGG 621
FF GGGR + GGGGG
Sbjct: 52 FFGGGGGRGRGGGGGGGG 69
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 622 PPPPPXXFXXLPPPXXKKKK 681
PPPPP LPPP ++K
Sbjct: 357 PPPPPPFAPTLPPPPPPRRK 376
>01_05_0641 - 23881429-23881836
Length = 135
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 663 GGGEXXKXXGGGGGG 619
GGGE K GGGGGG
Sbjct: 40 GGGETGKPDGGGGGG 54
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 663 GGGEXXKXXGGGGGGXFFF 607
GGGE + GGGGGG F
Sbjct: 46 GGGEAGRVRGGGGGGAALF 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,755,797
Number of Sequences: 37544
Number of extensions: 418164
Number of successful extensions: 5485
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4154
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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