Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K17
         (984 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    30   2.9  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    29   6.7  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    28   8.9  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   8.9  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    28   8.9  

>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 579 KKKKXXXGXXKKKXPPPPPXXFFXPPPP 662
           KKKK   G    + PPPPP     P PP
Sbjct: 38  KKKKDVSGAPSAESPPPPPPAPKVPEPP 65


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 609 KKKXPPPPPXXFFXPPPP 662
           +++ PPPPP   + PPPP
Sbjct: 129 QQQPPPPPPPPHYPPPPP 146


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 621 PPPPPXXFFXPPPP 662
           PPPPP  +  PPPP
Sbjct: 96  PPPPPHYYTQPPPP 109


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 621 PPPPPXXFFXPPPP 662
           PPPPP     PPPP
Sbjct: 790 PPPPPLGIIPPPPP 803


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 612 KKXPPPPPXXFFXPPPP 662
           +K PPPPP     PPPP
Sbjct: 17  RKQPPPPPSPRRAPPPP 33


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 621 PPPPPXXFFXPPPP 662
           PPPPP     PPPP
Sbjct: 790 PPPPPLGIIPPPPP 803


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,574
Number of Sequences: 27780
Number of extensions: 239597
Number of successful extensions: 1572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)