Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_K16
(1152 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 32 3.4
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 32 3.4
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein. 32 3.4
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 32 3.4
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 32 3.4
BC110393-1|AAI10394.1| 439|Homo sapiens EMI domain containing 2... 32 4.5
BC109254-1|AAI09255.1| 439|Homo sapiens EMI domain containing 2... 32 4.5
AJ416091-1|CAC94778.1| 441|Homo sapiens putative emu2 protein p... 32 4.5
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 31 7.9
X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ... 31 7.9
U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain... 31 7.9
U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain... 31 7.9
U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein. 31 7.9
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 31 7.9
D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein. 31 7.9
D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein. 31 7.9
BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein. 31 7.9
BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein. 31 7.9
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 31 7.9
AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alph... 31 7.9
AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha ... 31 7.9
AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha ... 31 7.9
AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha ... 31 7.9
AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha ... 31 7.9
AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha ... 31 7.9
AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha ... 31 7.9
AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha... 31 7.9
AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha... 31 7.9
AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein. 31 7.9
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen... 31 7.9
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 31 7.9
AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein. 31 7.9
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 31 7.9
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 32.3 bits (70), Expect = 3.4
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXP 461
G G PG A G R PGL P G PPGP G+G P P
Sbjct: 516 GEAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR-GGAGPPGPE--GGKGAAGPPGP 568
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
collagen protein.
Length = 1466
Score = 32.3 bits (70), Expect = 3.4
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXP 461
G G PG A G R PGL P G PPGP G+G P P
Sbjct: 663 GDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR-GGAGPPGPE--GGKGAAGPPGP 715
>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
Length = 1163
Score = 32.3 bits (70), Expect = 3.4
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXP 461
G G PG A G R PGL P G PPGP G+G P P
Sbjct: 663 GDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR-GGAGPPGPE--GGKGAAGPPGP 715
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 32.3 bits (70), Expect = 3.4
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXP 461
G G PG A G R PGL P G PPGP G+G P P
Sbjct: 663 GDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR-GGAGPPGPE--GGKGAAGPPGP 715
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 32.3 bits (70), Expect = 3.4
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXP 461
G G PG A G R PGL P G PPGP G+G P P
Sbjct: 663 GDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR-GGAGPPGPE--GGKGAAGPPGP 715
>BC110393-1|AAI10394.1| 439|Homo sapiens EMI domain containing 2
protein.
Length = 439
Score = 31.9 bits (69), Expect = 4.5
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXX--PXXXPGWXXPPGPRXXAGE-GXGSTPXPX 464
G G PG + A G + G P PG PPGPR GE G P P
Sbjct: 197 GPAGPPGQTGPPGPAGPPGSKGDRGQTGEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPP 256
Query: 465 XP 470
P
Sbjct: 257 GP 258
>BC109254-1|AAI09255.1| 439|Homo sapiens EMI domain containing 2
protein.
Length = 439
Score = 31.9 bits (69), Expect = 4.5
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXX--PXXXPGWXXPPGPRXXAGE-GXGSTPXPX 464
G G PG + A G + G P PG PPGPR GE G P P
Sbjct: 197 GPAGPPGQTGPPGPAGPPGSKGDRGQTGEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPP 256
Query: 465 XP 470
P
Sbjct: 257 GP 258
>AJ416091-1|CAC94778.1| 441|Homo sapiens putative emu2 protein
protein.
Length = 441
Score = 31.9 bits (69), Expect = 4.5
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXX--PXXXPGWXXPPGPRXXAGE-GXGSTPXPX 464
G G PG + A G + G P PG PPGPR GE G P P
Sbjct: 199 GPAGPPGQTGPPGPAGPPGSKGDRGQTGEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPP 258
Query: 465 XP 470
P
Sbjct: 259 GP 260
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 31.1 bits (67), Expect = 7.9
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX-----PGWXXPPGPRXXAGE-GXGSTP 455
G G PG + G R PG P PG PPGPR G+ G P
Sbjct: 1121 GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPP 1180
Query: 456 XPXXP 470
P P
Sbjct: 1181 GPPGP 1185
>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 chain
protein.
Length = 1670
Score = 31.1 bits (67), Expect = 7.9
Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX--PGWXXPPGPRXXAGEGXGSTPXPXX 467
G +G PG + G R PG+ PG PPGPR G+ GST P
Sbjct: 952 GDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPR---GD-LGSTGNPGE 1007
Query: 468 PXXXXXXGRXXXXXLXXAXXXGPXXXXXXRQXXPXLGXXRGXXGRRAD 611
P G + + R P L G G + +
Sbjct: 1008 PGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGE 1055
>U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain
protein.
Length = 1690
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1233 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1290
Query: 453 PXPXXP 470
P P
Sbjct: 1291 GDPGFP 1296
>U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1234 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1291
Query: 453 PXPXXP 470
P P
Sbjct: 1292 GDPGFP 1297
>U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein.
Length = 1691
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1234 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1291
Query: 453 PXPXXP 470
P P
Sbjct: 1292 GDPGFP 1297
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 31.1 bits (67), Expect = 7.9
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX-----PGWXXPPGPRXXAGE-GXGSTP 455
G G PG + G R PG P PG PPGPR G+ G P
Sbjct: 697 GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPP 756
Query: 456 XPXXP 470
P P
Sbjct: 757 GPPGP 761
>D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein.
Length = 1600
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1229 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1286
Query: 453 PXPXXP 470
P P
Sbjct: 1287 GDPGFP 1292
>D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein.
Length = 1678
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1233 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1290
Query: 453 PXPXXP 470
P P
Sbjct: 1291 GDPGFP 1296
>BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 31.1 bits (67), Expect = 7.9
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEG 440
G RG PG G PGL PG PPGP+ AG G
Sbjct: 291 GDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGL-PGRRGPPGPKGEAGPG 338
>BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 31.1 bits (67), Expect = 7.9
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEG 440
G RG PG G PGL PG PPGP+ AG G
Sbjct: 291 GDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGL-PGRRGPPGPKGEAGPG 338
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 31.1 bits (67), Expect = 7.9
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX-----PGWXXPPGPRXXAGE-GXGSTP 455
G G PG + G R PG P PG PPGPR G+ G P
Sbjct: 1121 GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPP 1180
Query: 456 XPXXP 470
P P
Sbjct: 1181 GPPGP 1185
>AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alpha 2
protein.
Length = 703
Score = 31.1 bits (67), Expect = 7.9
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEG 440
G RG PG G PGL PG PPGP+ AG G
Sbjct: 337 GDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGL-PGRRGPPGPKGEAGPG 384
>AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1234 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1291
Query: 453 PXPXXP 470
P P
Sbjct: 1292 GDPGFP 1297
>AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1233 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1290
Query: 453 PXPXXP 470
P P
Sbjct: 1291 GDPGFP 1296
>AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1234 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1291
Query: 453 PXPXXP 470
P P
Sbjct: 1292 GDPGFP 1297
>AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1233 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1290
Query: 453 PXPXXP 470
P P
Sbjct: 1291 GDPGFP 1296
>AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1234 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1291
Query: 453 PXPXXP 470
P P
Sbjct: 1292 GDPGFP 1297
>AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1233 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1290
Query: 453 PXPXXP 470
P P
Sbjct: 1291 GDPGFP 1296
>AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1234 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1291
Query: 453 PXPXXP 470
P P
Sbjct: 1292 GDPGFP 1297
>AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 31.1 bits (67), Expect = 7.9
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGST 452
P L G G PG S A Q G PGL PG PPGP G T
Sbjct: 1233 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGL-DGERGRPGPAGPPGP-PGPSSNQGDT 1290
Query: 453 PXPXXP 470
P P
Sbjct: 1291 GDPGFP 1296
>AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein.
Length = 705
Score = 31.1 bits (67), Expect = 7.9
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEG 440
G RG PG G PGL PG PPGP+ AG G
Sbjct: 339 GDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGL-PGRRGPPGPKGEAGPG 386
>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
protein.
Length = 1670
Score = 31.1 bits (67), Expect = 7.9
Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX--PGWXXPPGPRXXAGEGXGSTPXPXX 467
G +G PG + G R PG+ PG PPGPR G+ GST P
Sbjct: 952 GDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPR---GD-LGSTGNPGE 1007
Query: 468 PXXXXXXGRXXXXXLXXAXXXGPXXXXXXRQXXPXLGXXRGXXGRRAD 611
P G + + R P L G G + +
Sbjct: 1008 PGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGE 1055
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 31.1 bits (67), Expect = 7.9
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX-----PGWXXPPGPRXXAGE-GXGSTP 455
G G PG + G R PG P PG PPGPR G+ G P
Sbjct: 1118 GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPP 1177
Query: 456 XPXXP 470
P P
Sbjct: 1178 GPPGP 1182
>AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.
Length = 1084
Score = 31.1 bits (67), Expect = 7.9
Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX--PGWXXPPGPRXXAGEGXGSTPXPXX 467
G +G PG + G R PG+ PG PPGPR G+ GST P
Sbjct: 366 GDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPR---GD-LGSTGNPGE 421
Query: 468 PXXXXXXGRXXXXXLXXAXXXGPXXXXXXRQXXPXLGXXRGXXGRRAD 611
P G + + R P L G G + +
Sbjct: 422 PGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGE 469
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 31.1 bits (67), Expect = 7.9
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Frame = +3
Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX-----PGWXXPPGPRXXAGE-GXGSTP 455
G G PG + G R PG P PG PPGPR G+ G P
Sbjct: 1124 GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPP 1183
Query: 456 XPXXP 470
P P
Sbjct: 1184 GPPGP 1188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.140 0.467
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,178,947
Number of Sequences: 237096
Number of extensions: 943445
Number of successful extensions: 3093
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2947
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16018452930
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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