Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K16
         (1152 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    31   2.0  
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    30   3.5  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.7  
U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protei...    29   6.2  
M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.     29   6.2  

>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical
           protein F02D10.1 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 20/59 (33%), Positives = 21/59 (35%)
 Frame = +3

Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXPXXP 470
           G  G PG      GA   G    PG    P   PG   P GP   +G G    P P  P
Sbjct: 213 GQPGQPGGP-GQDGASSAGGEAGPG----PAGPPGPAGPAGPDGQSGSGSAGGPGPKGP 266


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
 Frame = +3

Query: 303 GXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAG-EGXGSTPXPXXP 470
           G PG       A   G     G    P   PG   PPGP   AG +G   TP P  P
Sbjct: 158 GPPGPPGPDGPAGPAGPDGEAGSPAAPSP-PGPPGPPGPAGPAGNDGAAGTPGPDGP 213


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
 Frame = +3

Query: 273 PXLXPXXGXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXX---PGWXXPPGPRXXAG 434
           P   P  G  G PG      G    G    PG    P      PG   PPGP   AG
Sbjct: 192 PGNTPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQGPPGPPGPAG 248



 Score = 29.5 bits (63), Expect = 4.7
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
 Frame = +3

Query: 294 GXRGXPGXSWXXXGAXQXGX----RXXPGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXP 461
           G  G PG      G    G        PG    P   PG   PPGP   AG+   + P P
Sbjct: 208 GPPGGPGNDGQPGGPGNPGAPGAVTEVPG-QQGPPGPPGPAGPPGPAGNAGQAGYAQPGP 266

Query: 462 XXP 470
             P
Sbjct: 267 AGP 269


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 363 PGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXPXXP 470
           PG    P   PG   PP P      G G  P P  P
Sbjct: 304 PGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 363 PGLXXXPXXXPGWXXPPGPRXXAGEGXGSTPXPXXP 470
           PG    P   PG   PP P      G G  P P  P
Sbjct: 314 PGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349


>U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protein 8
           protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
 Frame = +3

Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGE-GXGSTPXPXXP 470
           G  G PG +    G  + G    PG    P   PG    PG     G+ G    P P  P
Sbjct: 162 GRHGPPGPTGGQGGPGEQGDAGRPGAAGRP-GPPGPRGEPGTEYRPGQAGRAGPPGPRGP 220


>M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
 Frame = +3

Query: 294 GXRGXPGXSWXXXGAXQXGXRXXPGLXXXPXXXPGWXXPPGPRXXAGE-GXGSTPXPXXP 470
           G  G PG +    G  + G    PG    P   PG    PG     G+ G    P P  P
Sbjct: 162 GRHGPPGPTGGQGGPGEQGDAGRPGAAGCP-GPPGPRGEPGTEYRPGQAGRAGPPGPRGP 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.140    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,338,328
Number of Sequences: 27780
Number of extensions: 108513
Number of successful extensions: 454
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3130337400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)