Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K13
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0426 + 20667639-20667938                                         31   1.2  
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   4.7  
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    29   6.3  

>06_03_0426 + 20667639-20667938
          Length = 99

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 181 SRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQDRLQVCKSKS*G 35
           SR++L  S   S + A+AAS  +   +R   LL  +QDR Q+C+S   G
Sbjct: 50  SRTFLLWSLKVSRSYAMAASSAVLKVSRVVKLLRWWQDREQLCRSNGGG 98


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -1

Query: 307 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 143
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 142 TPALAASMHIANTTR 98
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 546 TLWENNRVYFKIHNTKYNQYLKMSTTTC-NCNSRXRVVYGGNSADSTRGAMVLPXPPSTK 722
           T W  N+ Y  ++  + +QY ++ +++C       + +Y  N   S +   VL  PP T 
Sbjct: 259 TTWFPNQNYQHVYKEEESQYQEILSSSCAESKISAQPIYCYNQQFSEQPLHVLVEPPETV 318

Query: 723 TTSWFFIYQSPNSXN 767
            +     Y+S ++ N
Sbjct: 319 YSQKLEYYESFSTYN 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,275
Number of Sequences: 37544
Number of extensions: 401967
Number of successful extensions: 1180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)