Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K11
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    56   7e-09
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    43   7e-05
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   2.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   3.5  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   3.5  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   6.1  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   6.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   6.1  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   8.1  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
 Frame = +3

Query: 189 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 356
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+     +L G     +A+V Q+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96

Query: 357 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERIT 536
            S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+LV  R+T
Sbjct: 97  CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156

Query: 537 L 539
           L
Sbjct: 157 L 157



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +1

Query: 538 LADVIVFSTLLHAFQHVLXPSVRSSLINVQRWFLXVAHQPQVSAVVGSLTLCAXPPTYXP 717
           LAD+     L     +VL  S  +   ++ R++  + HQ ++ A+   L     P     
Sbjct: 157 LADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQPLPIIK 216

Query: 718 KKYQELAGA 744
            + +E A A
Sbjct: 217 AENKEAAPA 225


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 8/165 (4%)
 Frame = +3

Query: 69  MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 248
           M  G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  
Sbjct: 1   MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57

Query: 249 ADGKVLLTESNAIAYYVA------NESLRGGDLATQARVWQWASWSDSELL-PASC-AWV 404
           ADG  L      + Y+         E L   +   +A + +W  + + +++ P +   WV
Sbjct: 58  ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117

Query: 405 FPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITL 539
             + G + + ++  + + +  + +LK+ +  +  RT+LV +R TL
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTL 162


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 493 DIFSHAPSLLPRESHL--ADVIVFSTLLHAFQHVLXPSVRSSLINVQRWFLXVAHQPQVS 666
           D F  + + + ++S +  AD+ V++ + H++   L       L NV RWF  + HQ  V 
Sbjct: 129 DEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESVM 187

Query: 667 AVVGSLTL 690
               S+++
Sbjct: 188 EAANSMSM 195


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 96  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 275
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 276 SN 281
           SN
Sbjct: 612 SN 613


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 325 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 420
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 265 STFPSALSNAGTFPAGNFFKKSSDL 191
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 463 TYWPP*KYWTDIFSHAPSL 519
           TY PP  Y  D+FS APS+
Sbjct: 257 TYLPPFNYDHDVFSFAPSV 275


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 276 SNAIAYYVANESLRGGDLATQARVWQWAS 362
           S + A Y+ NE+LR G +   +R+W  AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 355 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 462
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,189
Number of Sequences: 5004
Number of extensions: 73050
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)