Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K10
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ320257-1|CAC44622.1|  877|Caenorhabditis elegans putative telo...    30   1.8  
AF400665-1|AAL28024.1|  877|Caenorhabditis elegans CLK-2 protein.      30   1.8  
AC006605-5|AAK85444.3|  877|Caenorhabditis elegans Clock (biolog...    30   1.8  

>AJ320257-1|CAC44622.1|  877|Caenorhabditis elegans putative
           telomere binding protein protein.
          Length = 877

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 634 IIGPLYWVHHTVRXIQALTWLSPFLHXQSGSKCKIHSSPLYIK 506
           I+  + ++ H  R   ++ W S FL+   G  C++   P+Y++
Sbjct: 351 IVRMILYLVHLFRTCSSIDWESLFLNSMDGVHCRMSMLPMYVQ 393


>AF400665-1|AAL28024.1|  877|Caenorhabditis elegans CLK-2 protein.
          Length = 877

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 634 IIGPLYWVHHTVRXIQALTWLSPFLHXQSGSKCKIHSSPLYIK 506
           I+  + ++ H  R   ++ W S FL+   G  C++   P+Y++
Sbjct: 351 IVRMILYLVHLFRTCSSIDWESLFLNSMDGVHCRMSMLPMYVQ 393


>AC006605-5|AAK85444.3|  877|Caenorhabditis elegans Clock
           (biological timing) abnormalityprotein 2 protein.
          Length = 877

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 634 IIGPLYWVHHTVRXIQALTWLSPFLHXQSGSKCKIHSSPLYIK 506
           I+  + ++ H  R   ++ W S FL+   G  C++   P+Y++
Sbjct: 351 IVRMILYLVHLFRTCSSIDWESLFLNSMDGVHCRMSMLPMYVQ 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,109
Number of Sequences: 27780
Number of extensions: 330979
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)