Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K10
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 102 ILSCYFRFLEIFKDE*RKQSFDGQV*KQLFRRLSGCGC*GDRGSETCRSCRSREGKIP 275
           I   Y   L  + D  R++   G V  +L   L+     G++ SE C S + +  K+P
Sbjct: 500 IQEIYLEALRAYVDN-RRRPNPGTVFARLLSVLTELRTLGNQNSEMCFSLKFKNKKLP 556


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 625 PLYWVHHTVRXIQALTWLSPFL 560
           P+Y  HH +   Q L   SP+L
Sbjct: 68  PIYQSHHHLHHHQVLYQQSPYL 89


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 559 HXQSGSKCKIHSSPLYIKVNARSKPCNT 476
           +  SG+K  + +S  +IK N++++  N+
Sbjct: 549 YINSGNKISLATSKSFIKANSQTEVSNS 576


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,499
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)