Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K09
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    90   4e-19
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    84   2e-17
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    42   9e-05
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   1.6  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   3.7  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 90.2 bits (214), Expect = 4e-19
 Identities = 53/124 (42%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
 Frame = +3

Query: 138 TIITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLE 317
           T I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ VL 
Sbjct: 40  TPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQEVLT 97

Query: 318 AGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPL---GAAVEIE 488
             G+SL  +VK  + LA MDDF   NKVY E  P   PAR    V  +PL   G  +EIE
Sbjct: 98  EAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIE 157

Query: 489 AIXL 500
            I L
Sbjct: 158 CIAL 161


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
 Frame = +3

Query: 174 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 353
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+SLE +VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 354 TVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPL---GAAVEIEAI 494
            + L  +DDF   N+VY E  P   PAR T    ++PL   G  +EIE I
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECI 123


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 25/81 (30%), Positives = 40/81 (49%)
 Frame = +3

Query: 270 EAQTRQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPKACPARMTYE 449
           + +   A++NL  +L   G S ++V   TV+L+SM  F  FN VY +YF    P   +  
Sbjct: 324 QGEAESAINNLNELLGTYGYSNKNVYFVTVILSSMSKFAEFNSVYNKYFDFTNPPSRSCV 383

Query: 450 VSRLPLGAAVEIEAIXLCGDL 512
            +  PL +   I    + GD+
Sbjct: 384 AA--PLASEYRIVMSCIVGDV 402



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 171 VGPYSQAILADKTLYISGILGL 236
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 258 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 350
           C G +  T++ +D LR  ++AGG   E  +K
Sbjct: 88  CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 92  GRNFVFG-TPVQESSQILREFPYSXIGN 12
           G+ F++G TP QE  +IL  F Y+ + N
Sbjct: 585 GKYFIYGGTPQQERMRILENFQYNELVN 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,224
Number of Sequences: 5004
Number of extensions: 50167
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)