Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K08
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    27   3.3  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   5.8  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   7.7  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +1

Query: 568 VNLSVRNGTVDQXHQNSVRAPSXSXPGQQRVPPATAAQRPRP 693
           +N++   G  ++  +    APS S P      P T    P+P
Sbjct: 196 INMNAGEGAAEEQEKKEEFAPSSSTPSADSAKPETTNPPPQP 237


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 536 HGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGG 423
           HGP  + A       +    L  S +   LT GT++GG
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGG 457


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 217 IDYTKVTIKEKELYTPPLDEVASVLSNGLTT 309
           +D ++ TIK+++ Y P L++ +S   N ++T
Sbjct: 466 MDISQDTIKQEDYYEPKLEQHSSSKRNSIST 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,599
Number of Sequences: 5004
Number of extensions: 65202
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)