Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_K08
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0938 + 21693629-21694360,21694558-21694613,21694836-21694869 30 2.7
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42... 29 4.7
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 29 4.7
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413... 29 4.7
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.2
08_02_1037 - 23851750-23852132,23852622-23852784 28 8.1
08_01_0206 - 1645033-1645133,1645739-1645800,1645935-1646128 28 8.1
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 28 8.1
07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277 28 8.1
>10_08_0938 + 21693629-21694360,21694558-21694613,21694836-21694869
Length = 273
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 598 DQXHQNSVRAPSXSXPGQQRVPPATAAQRPRPGL 699
D H +PS S PG RV PA + PRP L
Sbjct: 20 DAHHHVLAPSPSPSPPGTGRVRPAPVSLPPRPPL 53
>05_01_0061 -
422914-423027,423114-423149,423250-423324,423412-423465,
423554-423620,423912-424025,424114-424215,424220-424269,
424380-424424,424559-424642,424996-425100,425300-425443,
425535-425643,425738-425766
Length = 375
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 509 SSPALEPDRGRTWA*TAR 562
S P LEPDRG TW T R
Sbjct: 236 SQPGLEPDRGLTWQMTKR 253
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 352 LTEPPYYLKSPGL-TGDAKLVEIGGPPYLVPQVKRD 456
+ +PPY +++ G +G KL++ PY VP KRD
Sbjct: 324 ICDPPYGVRAGGRKSGGRKLIKGTVAPYTVPDEKRD 359
>01_07_0338 -
42840890-42841006,42841101-42841136,42841226-42841300,
42841380-42841433,42841703-42841769,42841844-42841900,
42842163-42842276,42842354-42842455,42842538-42842653,
42842892-42842975,42843429-42843533,42843732-42843875,
42843961-42844069,42844149-42844177
Length = 402
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 509 SSPALEPDRGRTWA*TAR 562
S P LEPDRG TW T R
Sbjct: 243 SQPGLEPDRGLTWQMTKR 260
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 443 CGTKYGGPPISTSLASPVNPGD 378
C ++GGPP +S+A PV G+
Sbjct: 200 CQVRWGGPPSKSSIADPVLTGE 221
>08_02_1037 - 23851750-23852132,23852622-23852784
Length = 181
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 502 PAFLAGAGAGPWPYLGV---NCEGIVNLSVRNGTVDQXHQNSVRAPSXSXPGQQRVPPAT 672
PA L A AG Y+ +C G + L++ G+ S PS + PG PPAT
Sbjct: 89 PATLDLAAAGMHYYICTISGHCAGGMKLAINVGSGSGSGSGSGTPPSTT-PGSSGTPPAT 147
Query: 673 AAQRPRP 693
+ +P
Sbjct: 148 PSSPSKP 154
>08_01_0206 - 1645033-1645133,1645739-1645800,1645935-1646128
Length = 118
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 652 QRVPPATAAQRPRPGLR-CSETTC*RXGNPER 744
Q++PPA+A P+P LR ++ C + GN R
Sbjct: 32 QKLPPASAFDMPKPNLRGLNKPKCIQCGNVAR 63
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = -3
Query: 716 VVSEQRSPGLGRWAAVAGGTRCCPGXLXLGARTLFWCXWSTVPLRTLRFTIPSQFTPRYG 537
+V++ + P + R+ ++ R PG L + F P+ L F +F YG
Sbjct: 322 IVTQIKEPKILRFKSLRDAMRD-PGDFLLSDFSKF----ERSPVLHLAFQALDKFKKEYG 376
Query: 536 HGPAPAPARKAGSRFKCSSSL 474
PAP + A S KC++ +
Sbjct: 377 RYPAPGCEQDAQSFLKCAADI 397
>07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277
Length = 229
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 710 SEQRSPGLGRWAAVAGGTRCCPGXLXLGARTLFW 609
S R +G W AVAGG R P + A L++
Sbjct: 136 SPARPVHVGPWLAVAGGCRDAPATAEMAAHVLYF 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,608,077
Number of Sequences: 37544
Number of extensions: 499474
Number of successful extensions: 1774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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