Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K08
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical pr...    88   8e-18
U41279-10|AAK31426.2|  308|Caenorhabditis elegans Hypothetical p...    33   0.19 
U41279-9|AAL02437.1|  220|Caenorhabditis elegans Hypothetical pr...    33   0.19 
U41279-8|AAL02436.1|  307|Caenorhabditis elegans Hypothetical pr...    32   0.45 
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   9.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   9.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   9.6  

>U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical
           protein C24B5.4 protein.
          Length = 284

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 39/104 (37%), Positives = 62/104 (59%)
 Frame = +1

Query: 286 VLSNGLTTNFKFVEVSVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKIY 465
           V    L +NF+ VEV++ D PDL++PP+  KS G   + ++ E+GGP  L P    D  +
Sbjct: 1   VFQTSLLSNFENVEVNIVDCPDLSKPPFNQKSSGFGHNLRIAEVGGPGNLYPGFHIDHQF 60

Query: 466 DLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTV 597
           D+ K+ +      A + G GAGPWP +G NCE + +++++ G V
Sbjct: 61  DIPKIGKVCEHPEAAVFGPGAGPWPIVGQNCEMVADVNLKTGEV 104


>U41279-10|AAK31426.2|  308|Caenorhabditis elegans Hypothetical
           protein C17C3.12a protein.
          Length = 308

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
 Frame = +1

Query: 508 FLAGAGAGPWP-YLGVNC-------EGIV------NLSVRNGTVDQXHQNSVRAPSXSXP 645
           FL  A A P   Y GV C       EG+V      NL +R GT+ Q H NSVR P  S  
Sbjct: 196 FLVLANADPEKGYRGVTCFIVDRDHEGVVLGEQDDNLGMRAGTIAQVHLNSVRVPKTSIV 255

Query: 646 GQ 651
           G+
Sbjct: 256 GE 257


>U41279-9|AAL02437.1|  220|Caenorhabditis elegans Hypothetical
           protein C17C3.12c protein.
          Length = 220

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
 Frame = +1

Query: 508 FLAGAGAGPWP-YLGVNC-------EGIV------NLSVRNGTVDQXHQNSVRAPSXSXP 645
           FL  A A P   Y GV C       EG+V      NL +R GT+ Q H NSVR P  S  
Sbjct: 30  FLVLANADPEKGYRGVTCFIVDRDHEGVVLGEQDDNLGMRAGTIAQVHLNSVRVPKTSIV 89

Query: 646 GQ 651
           G+
Sbjct: 90  GE 91


>U41279-8|AAL02436.1|  307|Caenorhabditis elegans Hypothetical
           protein C17C3.12b protein.
          Length = 307

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 571 NLSVRNGTVDQXHQNSVRAPSXSXPGQ 651
           NL +R GT+ Q H NSVR P  S  G+
Sbjct: 152 NLGMRAGTIAQVHLNSVRVPKTSIVGE 178


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +1

Query: 130 MSLSLLLVFGYAASVQMATLVTSTARMTSIDYT-KVTIKEKELYTPPLDEVASVLSNGLT 306
           +S  ++ V+ Y  SV        T     IDY   VTI       P LD +A+  S   T
Sbjct: 246 LSSFIVTVYRYTKSVYFMETSAFTTSDAMIDYLHSVTIAPSSDDQPLLDAIANSQSTQPT 305

Query: 307 TNFKFVEVSVADSPDLTEP 363
              K      ADS +L +P
Sbjct: 306 MRPKSTVYVFADSENLLDP 324


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 616 SVRAPSXSXPGQQRVPPATAAQRPRPGL 699
           ++ APS S  G   +PP T    P PGL
Sbjct: 692 NLSAPSTSAGGSSALPPITGGPPPPPGL 719


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 616 SVRAPSXSXPGQQRVPPATAAQRPRPGL 699
           ++ APS S  G   +PP T    P PGL
Sbjct: 692 NLSAPSTSAGGSSALPPITGGPPPPPGL 719


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 616 SVRAPSXSXPGQQRVPPATAAQRPRPGL 699
           ++ APS S  G   +PP T    P PGL
Sbjct: 275 NLSAPSTSAGGSSALPPITGGPPPPPGL 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,341,691
Number of Sequences: 27780
Number of extensions: 397355
Number of successful extensions: 1110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)