Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K07
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.97 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 677 PXPXPPPPPP 706
           P P PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 25.0 bits (52), Expect = 0.97
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 662 GGAXXPXPXPPPPPPPXXXG 721
           G +  P    PPPPPP   G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 683 PXPPPPPPPXXXGG 724
           P P PPPPP    G
Sbjct: 339 PKPAPPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 851 SPXXPXXPPPPP 886
           +P  P  PPPPP
Sbjct: 337 TPPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 689  PPPPPPPXXXG 721
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 683  PXPPPPPP 706
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 902  PPXPPPPP 925
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 692  PPPPPPXXXGG 724
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 683  PXPPPPPP 706
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +1

Query: 616 PPXPKXKKXKXXKXXXGXXXPXSXXPPXPP 705
           PP P+ ++    K   G   P     P PP
Sbjct: 55  PPHPRLRREAEPKAEPGNNRPIYIPQPRPP 84


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/27 (40%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
 Frame = +2

Query: 851 SPXXPXXPPPPPXXXXXPPXPPP--PP 925
           SP  P    PP      PP  PP  PP
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,129
Number of Sequences: 438
Number of extensions: 5722
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)