Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K04
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   5.1  
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911...    29   6.7  
07_03_1432 - 26508135-26508881,26509301-26509708                       29   6.7  
12_02_0299 - 17051570-17052474,17053542-17053755                       28   8.9  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   8.9  

>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +2

Query: 710 ETXPRAXXLFPTPCRLPXSLSRPXXPSGXXWA-LPHXPTPVGXP--ISGXKVLPXPPWGW 880
           E  P      P P  LP S S P  PS      LP  P P   P  I+G   LP PP   
Sbjct: 197 EAGPSTLPPPPPPPPLPAS-SEPVDPSAASLPPLPPPPPPPPKPANIAGAPGLPLPPPPP 255

Query: 881 VAPTPP 898
             P PP
Sbjct: 256 PPPGPP 261


>10_06_0110 +
           10889414-10889669,10889756-10889806,10890595-10891163,
           10891178-10891660,10891747-10891944,10893300-10893354,
           10893372-10893631
          Length = 623

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 892 GWGXPXPGWXGKDLXTRNWXTYRGGXMRK 806
           G G P  GW G+++    W   +GG  +K
Sbjct: 543 GLGLPGTGWKGREVALAPWPKEKGGRKQK 571


>07_03_1432 - 26508135-26508881,26509301-26509708
          Length = 384

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 758 PXSLSRPXXPSGXXWALPHXPTPVGXPISGXKVLPXPPWGWVAPTP 895
           P  ++ P  PS      P  P P   P S   V P PP  ++ P+P
Sbjct: 29  PTPITYPSPPSLSPSTPPTYPPPSSTPPSLAPVSPSPPTTYLPPSP 74


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
 Frame = +2

Query: 740 PTPCRLPXSLSRPXXPSGXXWALPHXP--TPVGXPISGXKVLPXPPWGWVAP 889
           P P   P     P  P    + LP  P  TP   P       P PPW W  P
Sbjct: 222 PRPWFPPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFP-FPLPPWPWAPP 272


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 37/156 (23%), Positives = 40/156 (25%)
 Frame = +2

Query: 431 PPPXXPXPRXSGXGNXFHXXQXXXXXXPQXQGXPQXKXFNQXXXKRPETXKGPXGXXFXX 610
           PPP  P P  SG    F          P     PQ    +      P     P       
Sbjct: 545 PPPPPPPPPPSGNKPAFSPPPPPPPPPPPP--LPQSNYASSQPPPPPPPP--PLPNCLVP 600

Query: 611 GXPPLXNXXKIXPXSSKXXXPXXXLXIPALFPLETXPRAXXLFPTPCRLPXSLSRPXXPS 790
             PP      I P  S    P     +P    L   P      P P  LP  L  P    
Sbjct: 601 SPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPP----PPPPSLPNRLVPPPPAP 656

Query: 791 GXXWALPHXPTPVGXPISGXKVLPXPPWGWVAPTPP 898
           G     P  P P   P S  +           P PP
Sbjct: 657 GIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPP 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,953,133
Number of Sequences: 37544
Number of extensions: 188516
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)