Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K04
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   3.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.0  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 410 FWGPXPXPPPXXPXPRXSGXGNXFH 484
           FW P P PPP  P  R  G  +  H
Sbjct: 438 FWPPCPPPPPFWPPHRRGGHCHHHH 462


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 809 PHXPTPVGXP-ISGXKVLPXPPWGWVAPTPP 898
           P  P P G P ISG    P PP G   P PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 809 PHXPTPVGXP-ISGXKVLPXPPWGWVAPTPP 898
           P  P P G P ISG    P PP G   P PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 809 PHXPTPVGXP-ISGXKVLPXPPWGWVAPTPP 898
           P  P P G P ISG    P PP G   P PP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,158
Number of Sequences: 27780
Number of extensions: 132051
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)