Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_K03
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 32 0.64
AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical ... 31 0.84
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 31 1.1
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 30 2.6
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 30 2.6
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p... 30 2.6
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 30 2.6
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
protein C18H2.1 protein.
Length = 1770
Score = 31.9 bits (69), Expect = 0.64
Identities = 24/80 (30%), Positives = 39/80 (48%)
Frame = +2
Query: 41 DFDTLLCVAVRFASPPHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTK 220
DF+ LL V +F+ + + Y K V C++ + + D +F KDI+ K
Sbjct: 552 DFNKLLEVH-KFSKRFYEFTN-YFKNNKPKVFLECVSRLRKTAI--DGENFVKDIQKTYK 607
Query: 221 EFHKTLEQQFNSLTKSKDAQ 280
+ HKTLE + + K +D Q
Sbjct: 608 KSHKTLESDSSPVLKLEDPQ 627
>AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical
protein ZK973.11 protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.84
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 218 KEFHKTLEQQFNSLTKSKDAQD-FSKAWKDGSESVLQ 325
+EFHKT E+ L K D + F AW DGS+ Q
Sbjct: 266 REFHKTAEEASKELRKHPDLWNRFQFAWLDGSDLASQ 302
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 493 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 621
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 493 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 621
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 493 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 621
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 493 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 621
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 493 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 621
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 493 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 621
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +1
Query: 112 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP*DFRTTV*LAHQVKGRTGLQQ 291
H + + + R +++GP++ T SR ++ +TP Q P ++ V AHQ + G Q+
Sbjct: 272 HNQNMTQNQR-NQTGPQNQQRTNDSRTMK--QTPQQQ-PSQYQNNVGAAHQHHNQHGQQE 327
Query: 292 GLEGRLRVRAATAQRLRQESPGE 360
++ + R+R+ + G+
Sbjct: 328 QHHQQMNEQRTDNNRMRENTNGQ 350
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +1
Query: 112 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP*DFRTTV*LAHQVKGRTGLQQ 291
H + + + R +++GP++ T SR ++ +TP Q P ++ V AHQ + G Q+
Sbjct: 272 HNQNMTQNQR-NQTGPQNQQRTNDSRTMK--QTPQQQ-PSQYQNNVGAAHQHHNQHGQQE 327
Query: 292 GLEGRLRVRAATAQRLRQESPGE 360
++ + R+R+ + G+
Sbjct: 328 QHHQQMNEQRTDNNRMRENTNGQ 350
>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
protein R05D3.1 protein.
Length = 1053
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 161 GAMVRRDAPDFFKDIEHHTKEFH--KTLEQQFNSLTKSKDAQDFSKAWKDGSES 316
G +A ++F D++HHT F T + + +D D K W SE+
Sbjct: 519 GTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIRRSEN 572
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +1
Query: 112 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP*DFRTTV*LAHQVKGRTGLQQ 291
H + + + R +++GP++ T SR ++ +TP Q P ++ V AHQ + G Q+
Sbjct: 272 HNQNMTQNQR-NQTGPQNQQRTNDSRTMK--QTPQQQ-PSQYQNNVGAAHQHHNQHGQQE 327
Query: 292 GLEGRLRVRAATAQRLRQESPGE 360
++ + R+R+ + G+
Sbjct: 328 QHHQQMNEQRTDNNRMRENTNGQ 350
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 493 LQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAK 621
LQ A + VQ + K + SNV E + + I DD K
Sbjct: 306 LQKAEEEVVQTIDQTVKNIKSNVNEVKKDVEKNIAEKVDDITK 348
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 453 GGPCGAPRPCARCSASTVPKPP 388
GG CG P PC + + V PP
Sbjct: 65 GGGCGGPAPCGGAAPAYVAPPP 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,969
Number of Sequences: 27780
Number of extensions: 256592
Number of successful extensions: 1064
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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