Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_K01
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    78   1e-15
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    29   0.85 
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   7.9  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   7.9  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   7.9  

>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 41/80 (51%), Positives = 51/80 (63%)
 Frame = +1

Query: 61  GCILLCGLFLYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLVNGLNASNFAMLGLGDIV 240
           G +LL  LF YDI++VFGT VMVTVA   + P K V PQ       N +  +MLGLGDIV
Sbjct: 138 GALLLGALFFYDIYFVFGTEVMVTVATGIDIPAKYVLPQ-----FKNPTRLSMLGLGDIV 192

Query: 241 VPGIFIALLLRFDKSLKRNS 300
           +PG+ +AL+ RFD     NS
Sbjct: 193 MPGLMLALMYRFDLHYYINS 212



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = +2

Query: 320 TFSAYILGLLATILVMHVFKHAQPALLYXXXXXXXXXXXXXXXRGDLPALFKY 478
           TF AY LGL  T   ++ FK AQPALLY               R +L  LF +
Sbjct: 226 TFIAYGLGLGVTNFALYYFKAAQPALLYLSPACIVAPLLTAWYRDELKTLFSF 278


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 243 HHDVTQPQHGKVARVQTVYQQILRKHQFDRSLEALGDGHHD 121
           HHD+  P  G  A +  V++Q +   Q+DRSL  L  G +D
Sbjct: 232 HHDLRAP--GCCAEMMKVHEQEICGLQWDRSLGQLASGGND 270


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -3

Query: 372 TCITRMVANRPRMYALNVAPEVKL-RVPFEALIEAQQESYEDARHHDVTQPQHGKVARVQ 196
           +CI         +Y+ +  P  KL +    A +   + ++ED   H+  Q QH   +   
Sbjct: 561 SCIISHTKYGKLVYSGDTRPNEKLVKAGIGASLLLHESTFEDDLKHEAIQRQHSTASEAL 620

Query: 195 TVYQQILRK 169
           +V Q +  K
Sbjct: 621 SVAQSMKAK 629


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 239 TMSPSPSMAKLL-AFKPFTSKS*GNTSLIGASKLLATVTMTLVPNTQKMSYRKSPQS 72
           ++ PSP    LL ++ PFT++       I  + +L  +   L+P  Q +S   S +S
Sbjct: 259 SLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKS 315


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 239 TMSPSPSMAKLLAFKPFTSKS*GNTS 162
           ++ P+PS  K+  ++P TSKS G  +
Sbjct: 313 SLPPTPSSPKVGVYRPMTSKSNGGVA 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,397
Number of Sequences: 5004
Number of extensions: 45128
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)