Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_K01
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical pr... 107 1e-23
U41007-7|AAA82268.3| 516|Caenorhabditis elegans Intramembrane p... 45 8e-05
U28740-2|AAM51506.2| 417|Caenorhabditis elegans Hypothetical pr... 32 0.60
U28740-1|AAA68317.3| 434|Caenorhabditis elegans Hypothetical pr... 32 0.60
Z81110-4|CAB03256.1| 381|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical p... 29 3.2
Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical p... 29 3.2
Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical p... 29 3.2
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 29 4.3
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 29 4.3
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 29 5.6
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 29 5.6
Z83237-5|CAB54283.1| 91|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 28 7.4
>Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical
protein T05E11.5 protein.
Length = 468
Score = 107 bits (257), Expect = 1e-23
Identities = 53/84 (63%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Frame = +1
Query: 31 EFLNYLTW*PGCILLCGLFLYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLVNG-LNAS 207
E L+ ++ G +LL GLF YDIFWVFGT+VM +VAK +API L FPQD+ NG + AS
Sbjct: 285 ERLHLASFKAGSLLLVGLFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEAS 344
Query: 208 NFAMLGLGDIVVPGIFIALLLRFD 279
+MLGLGDIV+PGIFIALL RFD
Sbjct: 345 KHSMLGLGDIVIPGIFIALLRRFD 368
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +2
Query: 320 TFSAYILGLLATILVMHVFKHAQPALLYXXXXXXXXXXXXXXXRGDLPALFKYED 484
T AY+ GL T+ VMH FK AQPALLY RG+L AL+ Y++
Sbjct: 394 TVVAYMAGLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAVIRGELSALWNYDE 448
>U41007-7|AAA82268.3| 516|Caenorhabditis elegans Intramembrane
protease (impas)family protein 3 protein.
Length = 516
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/77 (29%), Positives = 46/77 (59%)
Frame = +1
Query: 67 ILLCGLFLYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLVNGLNASNFAMLGLGDIVVP 246
I + G+ L+D+F+++ +++ TV K +P+ ++ P+D G N + A L DI+VP
Sbjct: 388 IFVIGMSLFDLFFLYVVDLLSTVVKENRSPLMILVPRD--TKG-NKQSLAAL---DIMVP 441
Query: 247 GIFIALLLRFDKSLKRN 297
G+F+ ++L++ N
Sbjct: 442 GVFLNVVLKYSSMYDTN 458
>U28740-2|AAM51506.2| 417|Caenorhabditis elegans Hypothetical
protein B0563.6b protein.
Length = 417
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 67 ILLCGLFLYDIFWVFGTNVMVTVAKSFEAPIKLVFP 174
I C L L I W G V V VA S E I +VFP
Sbjct: 91 IYQCHLMLTLINWALGAGVYVVVALSLERYISIVFP 126
>U28740-1|AAA68317.3| 434|Caenorhabditis elegans Hypothetical
protein B0563.6a protein.
Length = 434
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 67 ILLCGLFLYDIFWVFGTNVMVTVAKSFEAPIKLVFP 174
I C L L I W G V V VA S E I +VFP
Sbjct: 100 IYQCHLMLTLINWALGAGVYVVVALSLERYISIVFP 135
>Z81110-4|CAB03256.1| 381|Caenorhabditis elegans Hypothetical
protein T01D3.5 protein.
Length = 381
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -3
Query: 384 ACLNTCITRMVANRPRMYALNVAPEVKLRVPFEALIEAQQESYEDARHHDVTQPQHGKVA 205
A LN I R+V + P +P+ R + L+E + D + H+ Q HG +
Sbjct: 117 AVLNEAIGRVVRSPP------ASPDTPSRKKRDVLVETHSNNEHDEKEHEEKQHSHGNI- 169
Query: 204 RVQTVYQQIL 175
Q Y +L
Sbjct: 170 HAQIGYSLVL 179
>Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical
protein C36B1.12c protein.
Length = 662
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 332 YILGLLATILVMHVFKHAQPALLY 403
Y +GL+ T L + + K AQPAL+Y
Sbjct: 549 YGIGLIVTFLALALMKTAQPALIY 572
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 211 FAMLGLGDIVVPGIFIA 261
F +LGLGDIV+PG +A
Sbjct: 509 FTILGLGDIVMPGYLVA 525
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 67 ILLCGLFLYDIFWVFGTNVMVT 132
++LC +F+YD F VFGT M T
Sbjct: 425 LMLC-MFVYDAFMVFGTPYMTT 445
>Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical
protein C36B1.12b protein.
Length = 640
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 332 YILGLLATILVMHVFKHAQPALLY 403
Y +GL+ T L + + K AQPAL+Y
Sbjct: 549 YGIGLIVTFLALALMKTAQPALIY 572
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 211 FAMLGLGDIVVPGIFIA 261
F +LGLGDIV+PG +A
Sbjct: 509 FTILGLGDIVMPGYLVA 525
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 67 ILLCGLFLYDIFWVFGTNVMVT 132
++LC +F+YD F VFGT M T
Sbjct: 425 LMLC-MFVYDAFMVFGTPYMTT 445
>Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical
protein C36B1.12a protein.
Length = 652
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 332 YILGLLATILVMHVFKHAQPALLY 403
Y +GL+ T L + + K AQPAL+Y
Sbjct: 549 YGIGLIVTFLALALMKTAQPALIY 572
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 211 FAMLGLGDIVVPGIFIA 261
F +LGLGDIV+PG +A
Sbjct: 509 FTILGLGDIVMPGYLVA 525
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 67 ILLCGLFLYDIFWVFGTNVMVT 132
++LC +F+YD F VFGT M T
Sbjct: 425 LMLC-MFVYDAFMVFGTPYMTT 445
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 308 TSGATFSAYILGLLATILVMHVFKHAQPALLY 403
T+ A + A ++GL T++++ VFK A PAL +
Sbjct: 383 TTIACYVAILIGLCFTLVLLAVFKRALPALQF 414
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/82 (19%), Positives = 33/82 (40%)
Frame = -3
Query: 294 PFEALIEAQQESYEDARHHDVTQPQHGKVARVQTVYQQILRKHQFDRSLEALGDGHHDVG 115
P +L QQ+ + H QPQH + Q ++ Q+++ + +
Sbjct: 457 PLPSLQHPQQQQQQQQYHQMPPQPQHSPYPQQQQMHHQMVQHSPHHYQQQQQQQQYQQQH 516
Query: 114 TEHPEDVVQEESAEQDAAGSPR 49
+ P+ ++S +Q A P+
Sbjct: 517 QQSPQFPSYQQSPQQQQAPPPQ 538
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 308 TSGATFSAYILGLLATILVMHVFKHAQPAL 397
T+ A + A ++GL T++++ VFK A PAL
Sbjct: 383 TTIACYVAILIGLCFTLVLLAVFKRALPAL 412
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 308 TSGATFSAYILGLLATILVMHVFKHAQPAL 397
T+ A + A ++GL T++++ VFK A PAL
Sbjct: 383 TTIACYVAILIGLCFTLVLLAVFKRALPAL 412
>Z83237-5|CAB54283.1| 91|Caenorhabditis elegans Hypothetical
protein R06B9.5 protein.
Length = 91
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 269 NRRAMKMPGTTMSPSPSMAKLLAFKPFTSKS*GNTS 162
+R +P T PSP A L+ P S GNTS
Sbjct: 6 SRLTQDLPHETSEPSPKSASTLSLPPGESDQNGNTS 41
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 245 GTTMSPSPSMAKLLAFKPFTSKS*GNTSLIGASKLLATVTMTLVPNTQKMSYRKS 81
G + P+ S + L P TS S NT L+G + T + PNT+ S S
Sbjct: 537 GAPIKPTSSASNLSTASPATS-SWSNTDLLGGFSPMKPQTTSTPPNTRNPSASNS 590
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 245 GTTMSPSPSMAKLLAFKPFTSKS*GNTSLIGASKLLATVTMTLVPNTQKMSYRKS 81
G + P+ S + L P TS S NT L+G + T + PNT+ S S
Sbjct: 537 GAPIKPTSSASNLSTASPATS-SWSNTDLLGGFSPMKPQTTSTPPNTRNPSASNS 590
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,248,034
Number of Sequences: 27780
Number of extensions: 266393
Number of successful extensions: 804
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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