Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J24
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 88   LYTYPENFRAYKALIAAQYSGTDVKVA 168
            L+  PE+F A  ALI+ Q  G  + VA
Sbjct: 1616 LFRKPEHFVASYALISNQCEGDSLNVA 1642


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 546 ARXDSLGKQGRGV*EDGPSSTFKAXSRSDFARSTXCLLNC 427
           A   S G  G      GPS   +  SR +F+ S+   L+C
Sbjct: 13  AAVTSAGGHGFDAHLRGPSFVMEPPSRVEFSNSSGAWLDC 52


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 546 ARXDSLGKQGRGV*EDGPSSTFKAXSRSDFARSTXCLLNC 427
           A   S G  G      GPS   +  SR +F+ S+   L+C
Sbjct: 13  AAVTSAGGHGFDAHLRGPSFVMEPPSRVEFSNSSGAWLDC 52


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 174 FRIWRDQQVRRLLEEVSCRKSACIRKCRWKG 266
           F IWRD    ++ E  +   +A   +  W G
Sbjct: 32  FEIWRDSLPTKMRELNATACAALYERVEWSG 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,203
Number of Sequences: 438
Number of extensions: 5266
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)