Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_J23
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 171 2e-43
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 167 2e-42
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 29 0.69
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.69
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 2.1
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 2.8
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 3.7
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 6.4
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 171 bits (415), Expect = 2e-43
Identities = 89/185 (48%), Positives = 123/185 (66%), Gaps = 4/185 (2%)
Frame = +3
Query: 81 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 260
MGIDI H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 261 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 434
IS+S++A K + EG V+VGTVT+D RL +PK++VAAL T+ ARARIL AGG
Sbjct: 61 ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120
Query: 435 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVXTKGH--EKAR 608
E+LT DQLALRAPTG TVL++G+++AREA RHFG P H PYV ++G E+AR
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERAR 177
Query: 609 PSRRA 623
R++
Sbjct: 178 GRRKS 182
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 167 bits (405), Expect = 2e-42
Identities = 86/185 (46%), Positives = 122/185 (65%), Gaps = 4/185 (2%)
Frame = +3
Query: 81 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 260
MGIDI H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 261 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 434
IS+S++A K + + VVVGTVT+D R+ +PK+++AAL T+ ARARIL AGG
Sbjct: 61 ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120
Query: 435 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVXTKGH--EKAR 608
E+LT DQLALRAPTG TVLV+G+++AREA RHFG P H PYV ++G E+AR
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERAR 177
Query: 609 PSRRA 623
R++
Sbjct: 178 GRRKS 182
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.5 bits (63), Expect = 0.69
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 484 RQYWYKVSEMLVRQCVTLXLLQEHRALTLNPMFXPRDMKKQGPVVVLM 627
R +YK SE ++ Q + +LQ+ ALT N + + + G +VVL+
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPNLLARTIETVEGGGIVVLL 151
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.69
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 312 LIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 488
L+ +VV +TNDVRL++I + + H E A L A +++ + T KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752
Query: 489 VLVQGQRNAREAVRHFGPAPG 551
V+G EA + G PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 345 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 458
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 446 SKNFSSSSQNACTSFFGNMKSSHRH 372
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 424 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLXLLQEHRAL 564
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 443 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 330
KN+ SS + TS + N+ +S+R +R +QS V + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,833
Number of Sequences: 5004
Number of extensions: 61577
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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